View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_213 (Length: 260)

Name: NF1111_low_213
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_213
NF1111_low_213
[»] chr1 (5 HSPs)
chr1 (29-260)||(49711063-49711294)
chr1 (30-260)||(49688352-49688582)
chr1 (27-260)||(49215718-49215951)
chr1 (49-253)||(49714710-49714914)
chr1 (51-260)||(49683453-49683662)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 49711294 - 49711063
Alignment:
Q  29 aatatccataaaaatcacaatatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagac 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49711294 aatatccataaaaatcacaatatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccagcatttgaagac 49711195  T
Q  129 tcccttccagcatttccaccactttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49711194 tcccttccagcatttccaccactttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttc 49711095  T
Q  229 ttcatcattttcatttttaatacacttgagtc 260  Q
    ||||||||||||||||||||||| ||||||||    
T  49711094 ttcatcattttcatttttaatactcttgagtc 49711063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 49688582 - 49688352
Alignment:
Q  30 atatccataaaaatcacaatatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagact 129  Q
    ||||||| | |||| ||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||| || ||| ||    
T  49688582 atatccacacaaattacaatgtttcagatgataaatggatcgaagatgtagaaggagaagacaaaaagggtttgggtggtatttccagcacttcaaggct 49688483  T
Q  130 cccttccagcatttccaccactttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttct 229  Q
    |||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  49688482 cccttccagcatttccaccactttatgcattgcttgtcggtgtgaaggatcggtttgtatgcaccataaactcaccactgtcatttttcttaccatttct 49688383  T
Q  230 tcatcattttcatttttaatacacttgagtc 260  Q
    ||||||||||||||||||||| |||||||||    
T  49688382 tcatcattttcatttttaatagacttgagtc 49688352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 49215951 - 49215718
Alignment:
Q  27 tcaatatccataaaaatcacaatatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaag 126  Q
    |||||||||| | |||| |||| ||||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  49215951 tcaatatccacacaaattacaacatttcagatgatagattgataggtgatgttgaaggagaagacaaaaagggtttgggtggtatttcaagcacttgaag 49215852  T
Q  127 actcccttccagcatttccaccactttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatt 226  Q
     |||||||||| ||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  49215851 gctcccttccaacatttccaccactttatgcattgctggtcgattcaaagggtctgtttgtatgcaccataaactcaccactgtcatttttcttaccatt 49215752  T
Q  227 tcttcatcattttcatttttaatacacttgagtc 260  Q
    ||||||||| ||||||||||||||||| ||||||    
T  49215751 tcttcatcaatttcatttttaatacacctgagtc 49215718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 49 - 253
Target Start/End: Complemental strand, 49714914 - 49714710
Alignment:
Q  49 tatttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccacc 148  Q
    ||||||||||||||||||   || ||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  49714914 tatttcagatgataaatgagctgaagatgttgaaggagacgacaaaaagggtttgggtggtatttccagcacttgaaggctcccttccaacatttccacc 49714815  T
Q  149 actttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaa 248  Q
    |||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  49714814 actttatgcattcctggtcgatgcgaagggtcagttcgtatgcaccataaactcaccactgtcatttttcttaccatttcttcatcaatttcatttttaa 49714715  T
Q  249 tacac 253  Q
    |||||    
T  49714714 tacac 49714710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 49683662 - 49683453
Alignment:
Q  51 tttcagatgataaatggattggagatgttgaaggagaagacaaaaagggtttgggtggtatttccggcatttgaagactcccttccagcatttccaccac 150  Q
    ||||||||||||||| |||   |||| |||||||||| ||||||||||||||||||||||||||  ||| |||||| |||||||| ||||||||||||||    
T  49683662 tttcagatgataaattgatcaaagatcttgaaggagaggacaaaaagggtttgggtggtatttctagcacttgaaggctcccttctagcatttccaccac 49683563  T
Q  151 tttatgcattgctggtcgatgagaagggtcggtttgtatgcaccataaactcaccactgacatttttctgaccatttcttcatcattttcatttttaata 250  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| || ||| ||||| ||||| ||||||||| ||||||||||||||    
T  49683562 tttattcattgctggtcgatgtgaagggtcggttggtatgcaccataaactcaccattgtcatctttcttaccatctcttcatcaatttcatttttaata 49683463  T
Q  251 cacttgagtc 260  Q
    ||||||||||    
T  49683462 cacttgagtc 49683453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University