View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_216 (Length: 255)
Name: NF1111_low_216
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_216 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 19226640 - 19226472
Alignment:
| Q |
30 |
ggaaaatggacctagccttcttatttatgaccatataaccctagatattattaatcatgcacttagtggttgggtttacaccatgttctatatgaatcaa |
129 |
Q |
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| T |
19226640 |
ggaaaatggacctaaccttcttatttatgaccatacaaccctaaatattattaatcatgcacttattggttgggtttacaccatgttctatatgaatcaa |
19226541 |
T |
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| Q |
130 |
taccattaccatttaccaggtgttacaaatgtattgttgatcatgtttacctggactaagcatcataaa |
198 |
Q |
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| T |
19226540 |
taccatcaccatttaccaggtgttacaaatgtactgttgatcatgtttacctggactaaacatcataaa |
19226472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 19225457 - 19225415
Alignment:
| Q |
210 |
ttataagataaaattatcatgatattatataaaattagagtat |
252 |
Q |
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| T |
19225457 |
ttataagataaaattatcatgatattatataaaattagagtat |
19225415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 19226106 - 19226060
Alignment:
| Q |
202 |
tgtgtggcttataagataaaattatcatgatattatataaaattaga |
248 |
Q |
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| T |
19226106 |
tgtgtggtttgtaagataaaattataatgatattatatgaaattaga |
19226060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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