View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_219 (Length: 254)

Name: NF1111_low_219
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_219
NF1111_low_219
[»] chr1 (4 HSPs)
chr1 (3-241)||(30506315-30506554)
chr1 (192-244)||(15492194-15492245)
chr1 (181-237)||(36775861-36775916)
chr1 (181-244)||(23291780-23291843)
[»] chr4 (3 HSPs)
chr4 (183-244)||(47158139-47158199)
chr4 (78-121)||(22305841-22305884)
chr4 (191-239)||(9713827-9713874)
[»] chr6 (1 HSPs)
chr6 (181-238)||(28981067-28981123)
[»] scaffold0603 (1 HSPs)
scaffold0603 (142-237)||(7568-7660)
[»] chr7 (1 HSPs)
chr7 (181-237)||(1749288-1749343)
[»] chr2 (2 HSPs)
chr2 (181-244)||(12648062-12648125)
chr2 (183-239)||(14955424-14955479)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 30506554 - 30506315
Alignment:
Q  3 aatatttattcgatacaagtactatttaaacacaccatatcannnnnnnngtctctaatatcgatcctagttgtttagtgagagaaactatattttttct 102  Q
    ||||||||||||| |||||||||||||||||| |||||||||          ||||||||| |||||||||||||||||||||||||||||||||| |||    
T  30506554 aatatttattcgacacaagtactatttaaacaaaccatatcatttttttc--ctctaatattgatcctagttgtttagtgagagaaactatattttctct 30506457  T
Q  103 ttaagttctatttgtcctttgttcatcgaaaatatgtggtttaggtcattttttgatctataatcac----taagccgcatttcttttttctctttcttt 198  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||    |||||||||||||||||||||||||||||    
T  30506456 ttaagttctatttgtcctttgttcattgaaaatatgtggtttaggtcattttttga-ctgtaatcactaagtaagccgcatttcttttttctctttcttt 30506358  T
Q  199 caattctaaatagatgatttacacatatatcaagttttttcct 241  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  30506357 caattctaaataggtgattttcacatatatcaagttttttcct 30506315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 15492194 - 15492245
Alignment:
Q  192 tttctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 244  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||    
T  15492194 tttctttcaat-ctaaataaatgattttcacatatatcaagttttttcttttg 15492245  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 36775916 - 36775861
Alignment:
Q  181 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 237  Q
    ||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  36775916 tcttttttccctttctttcaat-ctaaataaatgattttcacatacatcaagttttt 36775861  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 23291843 - 23291780
Alignment:
Q  181 tcttttttctcttt-ctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 244  Q
    |||||||||||||| |||||||| |||||||  || ||| |||||||||||||||||||| ||||    
T  23291843 tcttttttctcttttctttcaat-ctaaataagtggttttcacatatatcaagttttttcttttg 23291780  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 47158139 - 47158199
Alignment:
Q  183 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 244  Q
    ||||||| ||||||||||||| ||||||  |||||| |||||||||||||||||||| ||||    
T  47158139 ttttttcactttctttcaatt-taaataagtgatttccacatatatcaagttttttcttttg 47158199  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 22305884 - 22305841
Alignment:
Q  78 tagtgagagaaactatattttttctttaagttctatttgtcctt 121  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||    
T  22305884 tagtgagagaaactatattttctctttaagttctctttttcctt 22305841  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 9713827 - 9713874
Alignment:
Q  191 ctttctttcaattctaaatagatgatttacacatatatcaagttttttc 239  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  9713827 ctttctttcaat-ctaaataagtgatttccacatatatcaagttttttc 9713874  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 28981067 - 28981123
Alignment:
Q  181 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagtttttt 238  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaat-ctaaataagtgatttccacatatatcaagtgtttt 28981123  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 7568 - 7660
Alignment:
Q  142 tttaggtcattttttgatctataatcactaagccgcatttcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 237  Q
    ||||||||||||||||| ||| ||||||| | | |||  ||||||  | ||||||||||||| ||||||  || ||| ||||||||||||||||||    
T  7568 tttaggtcattttttgacctagaatcactcatctgca--tcttttacccctttctttcaatt-taaataagtggttttcacatatatcaagttttt 7660  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 1749343 - 1749288
Alignment:
Q  181 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 237  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||||    
T  1749343 tcttttttccctttctttcaat-ctaaataagtgattttcacatacatcaagttttt 1749288  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 12648125 - 12648062
Alignment:
Q  181 tcttttttctcttt-ctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 244  Q
    |||||||||||||| |||||||| |||||||  |||||| |||||||||||||| ||||| ||||    
T  12648125 tcttttttctcttttctttcaat-ctaaataagtgatttccacatatatcaagtgttttcttttg 12648062  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 14955424 - 14955479
Alignment:
Q  183 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 239  Q
    ||||| |||||||||||||| |||||||  |||||| |||||| |||||||||||||    
T  14955424 tttttcctctttctttcaat-ctaaataagtgatttccacatacatcaagttttttc 14955479  T

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