View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_22 (Length: 493)
Name: NF1111_low_22
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 32266369 - 32266026
Alignment:
| Q |
1 |
taagggggaagcagataaatctggatttgatgattgtagaaggaaatacaataacaatgtaacaactatatttaagaaatcagggatgatgaataaggat |
100 |
Q |
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| T |
32266369 |
taaggtggaagcagataaatctggatttgatgattgtagaagcaaatacaataacaatgtaacaactatatttaagaaatcagggatgatgaataaggat |
32266270 |
T |
|
| Q |
101 |
ttggatcatgatacaaagttcgattcaagaaagaaagcaaactctgaaggatttt-cttttagcaacaaaaatgaagaaatctatgagaatggtagcaaa |
199 |
Q |
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| T |
32266269 |
ttggatcatgatacaaagttcgattcgagaaagaaagcaaactctgaaggatttttcttttagcaacaaaaataaagaaatctatgagaatggtagcaaa |
32266170 |
T |
|
| Q |
200 |
tgtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgttgagagtgatgaagaaaacagttcagaaagtg |
299 |
Q |
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| T |
32266169 |
agtttgaaatatgagttttttgattatgaaaaggacaatgatatttcttatgattcaacaacagatgttgagagtgatgaagaaaacagttcagaaagtg |
32266070 |
T |
|
| Q |
300 |
attcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
343 |
Q |
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| T |
32266069 |
attcttttcctgctgcaaaatctcataacagtaaagctgtgaat |
32266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 413 - 491
Target Start/End: Complemental strand, 32265956 - 32265878
Alignment:
| Q |
413 |
tatgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacatattgttggag |
491 |
Q |
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| T |
32265956 |
tatgaatgtccaatttgctacaaaattttcaggtcaggacaagcattaggaggacataaaagatcacattttgttggag |
32265878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 491
Target Start/End: Complemental strand, 19300482 - 19300405
Alignment:
| Q |
414 |
atgaatgtccaatttgttataaaattttcaggtcaggacaagcattaggaggacataaaagatcacatattgttggag |
491 |
Q |
| |
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|||||||||||||||| | || ||||||| |||||||||||| ||||| || || |||||||| ||| || |||||| |
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| T |
19300482 |
atgaatgtccaatttgcaacaagattttcaagtcaggacaagctttagggggtcacaaaagatcccattttattggag |
19300405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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