View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_220 (Length: 253)

Name: NF1111_low_220
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_220
NF1111_low_220
[»] chr1 (4 HSPs)
chr1 (3-240)||(30506315-30506554)
chr1 (191-243)||(15492194-15492245)
chr1 (180-236)||(36775861-36775916)
chr1 (180-243)||(23291780-23291843)
[»] chr4 (3 HSPs)
chr4 (182-243)||(47158139-47158199)
chr4 (77-120)||(22305841-22305884)
chr4 (190-238)||(9713827-9713874)
[»] chr6 (1 HSPs)
chr6 (180-237)||(28981067-28981123)
[»] scaffold0603 (1 HSPs)
scaffold0603 (141-236)||(7568-7660)
[»] chr7 (1 HSPs)
chr7 (180-236)||(1749288-1749343)
[»] chr2 (2 HSPs)
chr2 (180-243)||(12648062-12648125)
chr2 (182-238)||(14955424-14955479)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 30506554 - 30506315
Alignment:
Q  3 aatatttattcgatacaagtactatttaaacacaccatatcannnnnnngtctctaatatcgatcctagttgtttagtgagagaaactatattttttctt 102  Q
    ||||||||||||| |||||||||||||||||| |||||||||         ||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  30506554 aatatttattcgacacaagtactatttaaacaaaccatatcatttttttc-ctctaatattgatcctagttgtttagtgagagaaactatattttctctt 30506456  T
Q  103 taagttctatttgtcctttgttcatcgaaaatatgtggtttaggtcattttttgatctataatcac----taagccgcatttcttttttctctttctttc 198  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||    ||||||||||||||||||||||||||||||    
T  30506455 taagttctatttgtcctttgttcattgaaaatatgtggtttaggtcattttttga-ctgtaatcactaagtaagccgcatttcttttttctctttctttc 30506357  T
Q  199 aattctaaatagatgatttacacatatatcaagttttttcct 240  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  30506356 aattctaaataggtgattttcacatatatcaagttttttcct 30506315  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 15492194 - 15492245
Alignment:
Q  191 tttctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 243  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||    
T  15492194 tttctttcaat-ctaaataaatgattttcacatatatcaagttttttcttttg 15492245  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 36775916 - 36775861
Alignment:
Q  180 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 236  Q
    ||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  36775916 tcttttttccctttctttcaat-ctaaataaatgattttcacatacatcaagttttt 36775861  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 23291843 - 23291780
Alignment:
Q  180 tcttttttctcttt-ctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 243  Q
    |||||||||||||| |||||||| |||||||  || ||| |||||||||||||||||||| ||||    
T  23291843 tcttttttctcttttctttcaat-ctaaataagtggttttcacatatatcaagttttttcttttg 23291780  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 47158139 - 47158199
Alignment:
Q  182 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 243  Q
    ||||||| ||||||||||||| ||||||  |||||| |||||||||||||||||||| ||||    
T  47158139 ttttttcactttctttcaatt-taaataagtgatttccacatatatcaagttttttcttttg 47158199  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 22305884 - 22305841
Alignment:
Q  77 tagtgagagaaactatattttttctttaagttctatttgtcctt 120  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||    
T  22305884 tagtgagagaaactatattttctctttaagttctctttttcctt 22305841  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 9713827 - 9713874
Alignment:
Q  190 ctttctttcaattctaaatagatgatttacacatatatcaagttttttc 238  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  9713827 ctttctttcaat-ctaaataagtgatttccacatatatcaagttttttc 9713874  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 28981067 - 28981123
Alignment:
Q  180 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagtttttt 237  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaat-ctaaataagtgatttccacatatatcaagtgtttt 28981123  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 7568 - 7660
Alignment:
Q  141 tttaggtcattttttgatctataatcactaagccgcatttcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 236  Q
    ||||||||||||||||| ||| ||||||| | | |||  ||||||  | ||||||||||||| ||||||  || ||| ||||||||||||||||||    
T  7568 tttaggtcattttttgacctagaatcactcatctgca--tcttttacccctttctttcaatt-taaataagtggttttcacatatatcaagttttt 7660  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 1749343 - 1749288
Alignment:
Q  180 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 236  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||||    
T  1749343 tcttttttccctttctttcaat-ctaaataagtgattttcacatacatcaagttttt 1749288  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 12648125 - 12648062
Alignment:
Q  180 tcttttttctcttt-ctttcaattctaaatagatgatttacacatatatcaagttttttcctttg 243  Q
    |||||||||||||| |||||||| |||||||  |||||| |||||||||||||| ||||| ||||    
T  12648125 tcttttttctcttttctttcaat-ctaaataagtgatttccacatatatcaagtgttttcttttg 12648062  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 14955424 - 14955479
Alignment:
Q  182 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 238  Q
    ||||| |||||||||||||| |||||||  |||||| |||||| |||||||||||||    
T  14955424 tttttcctctttctttcaat-ctaaataagtgatttccacatacatcaagttttttc 14955479  T

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