View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_221 (Length: 252)

Name: NF1111_low_221
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_221
NF1111_low_221
[»] scaffold0651 (2 HSPs)
scaffold0651 (55-252)||(728-928)
scaffold0651 (28-64)||(962-998)
[»] chr4 (3 HSPs)
chr4 (55-252)||(31330814-31331014)
chr4 (61-155)||(2386706-2386802)
chr4 (28-64)||(31331048-31331084)
[»] chr3 (1 HSPs)
chr3 (61-152)||(1996744-1996835)
[»] chr5 (1 HSPs)
chr5 (61-155)||(15514517-15514612)
[»] scaffold0036 (1 HSPs)
scaffold0036 (74-132)||(19197-19255)
[»] chr2 (1 HSPs)
chr2 (71-152)||(1690933-1691014)
[»] chr1 (1 HSPs)
chr1 (61-130)||(8415568-8415638)
[»] chr7 (1 HSPs)
chr7 (60-100)||(29715438-29715478)


Alignment Details
Target: scaffold0651 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 55 - 252
Target Start/End: Complemental strand, 928 - 728
Alignment:
Q  55 ttttaaacaaataaaattatttgaagtagctaaatatattttattggatagttaaacacaaaatacacttactaatactaagaaaattataaattttggg 154  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  928 ttttacacaaataaaattatttaaaatagctaaatatattttattggataattaaacacaaaatacacttactaatactaataaaattataaattttggg 829  T
Q  155 ggcaggcaaagcgctacccctctctat----gcagctagtacgccccctggtctagcttgattg-aaaaacaaatagcatgcataaagcagctacgtgta 249  Q
    ||||||||||  ||||||| |||||||      ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  828 ggcaggcaaa--gctacccgtctctataaggttagctagtacgccccctggtctagcttgattgaaaaaacaaagagcatgcataaagcagctacgtgta 731  T
Q  250 aca 252  Q
    |||    
T  730 aca 728  T

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Target: scaffold0651; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 998 - 962
Alignment:
Q  28 caaattcacaggacaaaaaattaaatcttttaaacaa 64  Q
    |||| |||| |||||||||||||||||||||||||||    
T  998 caaactcacgggacaaaaaattaaatcttttaaacaa 962  T

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Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 55 - 252
Target Start/End: Complemental strand, 31331014 - 31330814
Alignment:
Q  55 ttttaaacaaataaaattatttgaagtagctaaatatattttattggatagttaaacacaaaatacacttactaatactaagaaaattataaattttggg 154  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31331014 ttttacacaaataaaattatttaaaatagctaaatatattttattggataattaaacacaaaatacacttactaatactaataaaattataaattttggg 31330915  T
Q  155 ggcaggcaaagcgctacccctctctat----gcagctagtacgccccctggtctagcttgattg-aaaaacaaatagcatgcataaagcagctacgtgta 249  Q
    ||||||||||  ||||||| |||||||      ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31330914 ggcaggcaaa--gctacccgtctctataaggttagctagtacgccccctggtctagcttgattgaaaaaacaaagagcatgcataaagcagctacgtgta 31330817  T
Q  250 aca 252  Q
    |||    
T  31330816 aca 31330814  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 2386802 - 2386706
Alignment:
Q  61 acaaataaaattatttgaagtagctaaatatattttattgga--tagttaaacacaaaatacacttactaatactaagaaaattataaattttgggg 155  Q
    ||||||||| |||||||  ||||||||||||||||||||||   ||| || |||||||||||||||||||||||||| |||| ||||||||||||||    
T  2386802 acaaataaacttatttggggtagctaaatatattttattgggggtagctagacacaaaatacacttactaatactaataaaaatataaattttgggg 2386706  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 31331084 - 31331048
Alignment:
Q  28 caaattcacaggacaaaaaattaaatcttttaaacaa 64  Q
    |||| |||| |||||||||||||||||||||||||||    
T  31331084 caaactcacgggacaaaaaattaaatcttttaaacaa 31331048  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 1996744 - 1996835
Alignment:
Q  61 acaaataaaattatttgaagtagctaaatatattttattgga-tagttaaacacaaaatacacttactaatactaagaaaattataaattttg 152  Q
    ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  1996744 acaaataaacttatttgaaatagctaaatatattttattggagtagttaaacacaaaatacacttacaaatactaataaaa-tataaattttg 1996835  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 15514517 - 15514612
Alignment:
Q  61 acaaataaaattatttgaagtagctaaatatattttattgg-atagttaaacacaaaatacacttactaatactaagaaaattataaattttgggg 155  Q
    ||||||||| |||||||| |||||   |||||||||||||| ||||  ||||||||||||||||||||||||| || |||||||||| ||||||||    
T  15514517 acaaataaacttatttgaggtagcccgatatattttattgggatagccaaacacaaaatacacttactaatacaaataaaattataatttttgggg 15514612  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 19197 - 19255
Alignment:
Q  74 tttgaagtagctaaatatattttattggatagttaaacacaaaatacacttactaatac 132  Q
    |||| ||||| ||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  19197 tttggagtagttaaatatattttattgggtaaataaacataaaatacacttactaatac 19255  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 1691014 - 1690933
Alignment:
Q  71 ttatttgaagtagctaaatatattttatt-ggatagttaaacacaaaatacacttactaatactaagaaaattataaattttg 152  Q
    |||||||| |||| ||||||||||||||| ||  || |||||||||||||||| ||||||||| || |||| ||||| |||||    
T  1691014 ttatttgaggtagataaatatattttattggggcagctaaacacaaaatacac-tactaatacaaataaaaatataatttttg 1690933  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 8415568 - 8415638
Alignment:
Q  61 acaaataaaattatttgaagtagctaaatatattttatt-ggatagttaaacacaaaatacacttactaat 130  Q
    ||||||||| ||||||   |||||||||||||||||||| |||||| |||||| ||| |||| ||||||||    
T  8415568 acaaataaacttatttagggtagctaaatatattttattgggatagataaacataaagtacatttactaat 8415638  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 29715438 - 29715478
Alignment:
Q  60 aacaaataaaattatttgaagtagctaaatatattttattg 100  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  29715438 aacaaataaaattatttggagtagtgaaatatattttattg 29715478  T

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