View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_223 (Length: 252)
Name: NF1111_low_223
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_223 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 35612983 - 35613203
Alignment:
| Q |
5 |
tttaatagtagcttct-aaaaaacacgcgtctcttgcctcattgacacataaaccaacaatgtagatgttatcgtgcttttgtagacttaccactgatcc |
103 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| ||| ||||||| |||| |||| ||||||||| |||||| |||| |||||||||| ||||||| |
|
|
| T |
35612983 |
tttaatagtagcttctgaaaaaacacacgtctcttgcttcactgacacaaaaacaaacagtgtagatgtcatcgtgattttatagacttaccgctgatcc |
35613082 |
T |
|
| Q |
104 |
aaacatgcatatcatcttggagattttaaagattctacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatag |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35613083 |
aaacatgcgtatcatcttggagattttaaagattcaacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatag |
35613182 |
T |
|
| Q |
204 |
caggatagagggcaggtttat |
224 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
35613183 |
cagggtagagggcaggtttat |
35613203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 31789746 - 31789833
Alignment:
| Q |
133 |
agattctacttgagattttccacatggacccctcattctaatgaaaagcctatattcatcaaaggtcatagcaggatagagggcaggt |
220 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||||||||||||||||| || || || |||||||||||||| || || ||||| |||||| |
|
|
| T |
31789746 |
agattcaacttgagatttgccacaaggtcccctcattctaatgaagagtctgtactcatcaaaggtcattgctgggtagagtgcaggt |
31789833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University