View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_225 (Length: 251)
Name: NF1111_low_225
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_225 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 47251770 - 47251912
Alignment:
| Q |
16 |
attgagtttagcaaaattgattaaattctcacaactacctgaatcaatgtttaaatcgcgactaagagaaatatctatatatttaatgtctgacaatata |
115 |
Q |
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| T |
47251770 |
attgagtttagcaaaattgattaaattctcacaactatctgaatcaatgtttgaatcgcgactaagagaaatatctatatatttaatgtctgacaatata |
47251869 |
T |
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| Q |
116 |
cgtctcgattaagattactttcaatagattgaacatatataag |
158 |
Q |
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| T |
47251870 |
cgtctcgattaagattactttcgatagattgaacatatataag |
47251912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 47251930 - 47251964
Alignment:
| Q |
123 |
attaagattactttcaatagattgaacatatataa |
157 |
Q |
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| T |
47251930 |
attaagattactttcgatagattgaacatatataa |
47251964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 47251878 - 47251910
Alignment:
| Q |
178 |
ttaagattaatttcgatagattgaacatatata |
210 |
Q |
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| T |
47251878 |
ttaagattactttcgatagattgaacatatata |
47251910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 47251931 - 47251963
Alignment:
| Q |
178 |
ttaagattaatttcgatagattgaacatatata |
210 |
Q |
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| T |
47251931 |
ttaagattactttcgatagattgaacatatata |
47251963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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