View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_233 (Length: 251)
Name: NF1111_low_233
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_233 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 6713699 - 6713877
Alignment:
| Q |
51 |
gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa |
150 |
Q |
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| T |
6713699 |
gagtggcaaatcaaatcatatatatagaaagaaattgagtacaagagatacatatatccaatgcaatgtcaaaaggaaaagcaaaaacgatgcaactaaa |
6713798 |
T |
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| Q |
151 |
atcaagaaccatgagattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca |
231 |
Q |
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| T |
6713799 |
atcaagaaccat--gattcaacaaactcaatatcctgctaaaggcccgaggaatcatcaaaacataggggcacaatcaaca |
6713877 |
T |
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