View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_243 (Length: 232)
Name: NF1111_low_243
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_243 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0932 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 28790151 - 28789931
Alignment:
| Q |
7 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgccacctggtttccttctctga |
106 |
Q |
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|||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
28790151 |
agtaggaacggaggtggggtaggccaccactgagaggagaacatagctaagctttgaccattctttgccaaagcatcggccacctggttgccttctctga |
28790052 |
T |
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| Q |
107 |
gcacatgcacacaagaacagataattttattacattacgaaacttaagacaattataccatctggctttcatatgccaaggaacgcccatgttcttgtta |
206 |
Q |
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| T |
28790051 |
gcacatgcacgcaagaacagatgatgttattaca-----aaacttaagacaattataccatctggctttcatatgccaaggaacgcccatgttcttgtta |
28789957 |
T |
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| Q |
207 |
aaagcgttgaccactgatatggaatc |
232 |
Q |
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|||| |||||||||| ||||||||| |
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| T |
28789956 |
aaagtgttgaccactcttatggaatc |
28789931 |
T |
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Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 17148531 - 17148678
Alignment:
| Q |
80 |
catctgccacctggtttccttctctgagcacatgcacacaagaacagataattttattacattacgaaacttaagacaattataccatctggctttcata |
179 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17148531 |
catctgccacctggttgccttctctgagcacatgcacacaagaacagataatgttattaca-----aaacttaagacaattataccatctggctttcata |
17148625 |
T |
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| Q |
180 |
tgccaaggaacgcccatgttcttgttaaaagcgttgaccactgatatggaatc |
232 |
Q |
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| T |
17148626 |
tgccaaggtacgcccatgttcttgttaaaagcgttgaccactgatatggaatc |
17148678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 17142318 - 17142397
Alignment:
| Q |
7 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgc |
86 |
Q |
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| T |
17142318 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgc |
17142397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0932 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0932
Description:
Target: scaffold0932; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 1548 - 1639
Alignment:
| Q |
28 |
ggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacaca |
119 |
Q |
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| T |
1548 |
ggccaccactgggaggaaaacatagccaagccttgaccatttttagccaaagcatctgctacccggttgccttctctgagcacatgcacaca |
1639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 9715595 - 9715544
Alignment:
| Q |
76 |
aaagcatctgccacctggtttccttctctgagcacatgcacacaagaacaga |
127 |
Q |
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| T |
9715595 |
aaagcatctgcaacttggttaccttctctgagcacatgaacacaagaacaga |
9715544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 22216079 - 22216017
Alignment:
| Q |
64 |
ccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacacaagaacag |
126 |
Q |
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| T |
22216079 |
ccattctttgctaaggcatctgcaacctgattcccttccctgagcacatggacacaagaacag |
22216017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 25179449 - 25179387
Alignment:
| Q |
64 |
ccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacacaagaacag |
126 |
Q |
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||||||||||| ||||||| ||| ||||| || ||||| ||||||||||| |||||||||||| |
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| T |
25179449 |
ccattctttgctaaagcatttgcaacctgattcccttccctgagcacatggacacaagaacag |
25179387 |
T |
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