View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_248 (Length: 225)
Name: NF1111_low_248
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_248 |
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| [»] scaffold1452 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 43947556 - 43947753
Alignment:
| Q |
18 |
cacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaaagaacttcaaattgacgacagactcgtcactctacaagtgggtt |
117 |
Q |
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| T |
43947556 |
cacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaaagaacttcaaattgacgacagactcgtcactctacaagtgggtt |
43947655 |
T |
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| Q |
118 |
tcttatttcaatgctatttctgcatgcttttgttttttctgttcttggaatgttgtgaaaagtttgtttatttaagtgggattgtatgatattgttgg |
215 |
Q |
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| T |
43947656 |
tcttatttcaatgctatttctgcatgcttttgttttttctgttcttggaatgttgtgaaaagtttgtttatttaagtgggattgtatgatatggttgg |
43947753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1452 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1452
Description:
Target: scaffold1452; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 781 - 681
Alignment:
| Q |
18 |
cacaacaagtttagtcaacaatataaggcaacaattggagctgattttgtcactaaagaacttcaaattgacgacagactcgtcactctacaagtgggtt |
117 |
Q |
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| T |
781 |
cacaagaagttcagtcagcaatataaagctacaatcggtgctgactttgtcaccaaagaattgcagatcgatgaccgactagtgactctacaagtgggtt |
682 |
T |
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| Q |
118 |
t |
118 |
Q |
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| T |
681 |
t |
681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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