View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_249 (Length: 225)
Name: NF1111_low_249
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_249 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 49903983 - 49904121
Alignment:
| Q |
1 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
100 |
Q |
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| T |
49903983 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
49904082 |
T |
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| Q |
101 |
cacaagatgctctcaaagcatccaaacgacttcgtttca |
139 |
Q |
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| T |
49904083 |
cacaagatgctctcaaagcatccaaacgacttcgtttca |
49904121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 49563405 - 49563309
Alignment:
| Q |
43 |
gattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttca |
139 |
Q |
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| T |
49563405 |
gattcagatcaaccatctttcacagtttcctacctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgacttcgtttca |
49563309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 41483739 - 41483673
Alignment:
| Q |
73 |
tacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttcgtttca |
139 |
Q |
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|||||||| |||| ||| | |||||| |||||||| ||||| |||||||||||| ||||| |||||| |
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| T |
41483739 |
tacctcactaacacttgtggtttatcaccacaagaagctcttaaagcatccaaatgacttggtttca |
41483673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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