View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_252 (Length: 222)
Name: NF1111_low_252
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_252 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 19395856 - 19395996
Alignment:
| Q |
1 |
catcgtcgtccgcaacagcatcagcatcagcatcgggagtgggagcatgtgcatctgttttaccccaaggtaatttgaatcctgaaagtccaccttgaaa |
100 |
Q |
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| T |
19395856 |
catcgtcgtccgcaacagcatcagtatcagcatcgggagcgggagcatgtgcatctgatttaccccaaggtaatttgaatcctgaaagtccaccttgaaa |
19395955 |
T |
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| Q |
101 |
tgcattaacaatttgagaaacctgtgaagcaacagctaggg |
141 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||| |
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| T |
19395956 |
tgcattaacaatttgagaaacctgtgaaacaacagcgaggg |
19395996 |
T |
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