View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_254 (Length: 220)
Name: NF1111_low_254
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_254 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 49903983 - 49904115
Alignment:
| Q |
1 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
100 |
Q |
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| T |
49903983 |
cttcttcttctccaaccccaccactctctcaacaccacttctgattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctc |
49904082 |
T |
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| Q |
101 |
cacaagatgctctcaaagcatccaaacgacttc |
133 |
Q |
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| T |
49904083 |
cacaagatgctctcaaagcatccaaacgacttc |
49904115 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 49563405 - 49563315
Alignment:
| Q |
43 |
gattcagatcaacactctttcccagtttcctacctcaccaacaattgcgctttatctccacaagatgctctcaaagcatccaaacgacttc |
133 |
Q |
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| T |
49563405 |
gattcagatcaaccatctttcacagtttcctacctcaccaacaatttcggcttatcttcacaagatgctctcaaagcatctaaacgacttc |
49563315 |
T |
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