View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_262 (Length: 214)

Name: NF1111_low_262
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_262
NF1111_low_262
[»] chr8 (9 HSPs)
chr8 (55-197)||(2916148-2916293)
chr8 (55-196)||(3002274-3002418)
chr8 (55-197)||(2711303-2711448)
chr8 (55-195)||(3170287-3170430)
chr8 (55-158)||(2911190-2911296)
chr8 (101-177)||(3282564-3282640)
chr8 (139-196)||(2989289-2989346)
chr8 (131-195)||(9851196-9851260)
chr8 (119-176)||(3142250-3142307)
[»] chr1 (1 HSPs)
chr1 (55-197)||(10755677-10755822)
[»] chr6 (1 HSPs)
chr6 (55-196)||(18355689-18355833)
[»] chr7 (1 HSPs)
chr7 (94-167)||(3919211-3919284)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 2916148 - 2916293
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgt---ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916148 aaaccgccaataccaacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 2916247  T
Q  152 tgatatctgattctaatacaaaagagcaagtttctctccttacatc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2916248 tgatatctgattctaatacaaaagagcaagtttctctccttacatc 2916293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 3002418 - 3002274
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacatt---gtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||| ||||| |||||||| |||||||||||||||||   ||||| ||||||||| ||||| |  | || |||||| |||||||  |||||||| ||||    
T  3002418 aaaccaccaatcccaacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaa 3002319  T
Q  152 tgatatctgattctaatacaaaagagcaagtttctctccttacat 196  Q
    ||||||| |||||||| || ||||| | |||||| |||| |||||    
T  3002318 tgatatccgattctaacaccaaagaactagtttccctccctacat 3002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 2711303 - 2711448
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgt---ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||| |||||||||||||| |||| |||||||||||| |   ||  ||||| ||||||||| ||  ||| |||||  ||||||| ||||||||| ||||    
T  2711303 aaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaa 2711402  T
Q  152 tgatatctgattctaatacaaaagagcaagtttctctccttacatc 197  Q
    | || ||||||||||| |||||||| | | |||| |||||||||||    
T  2711403 taatctctgattctaacacaaaagaactactttccctccttacatc 2711448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 3170287 - 3170430
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgt---ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||| |||||||||||||| |||| |||||||||||| |   ||  ||||| ||||||||| ||  |||  ||||  ||||||| ||||||||| ||||    
T  3170287 aaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttctttttatcatcttctcttccaa 3170386  T
Q  152 tgatatctgattctaatacaaaagagcaagtttctctccttaca 195  Q
    |||| ||||||||||| |||||||| |  ||||| |||||||||    
T  3170387 tgatctctgattctaacacaaaagaacttgtttccctccttaca 3170430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 2911190 - 2911296
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgtt---tctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||| |||||||||||||| || ||||||||||| ||||    ||||||  | |||||||||||| ||| |||||||||||| |||| |||||| || |    
T  2911190 aaaccaccaataccaacaatagctatcaaggagacgttgtggtctctatgatgctgcctcaataaacttataatctcttttttgttattttctcttccga 2911289  T
Q  152 tgatatc 158  Q
    |||||||    
T  2911290 tgatatc 2911296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 3282564 - 3282640
Alignment:
Q  101 gtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaagag 177  Q
    ||||||||||||| | ||||| |||||| ||||||| ||||||||| ||| |||||| ||||||||| | |||||||    
T  3282564 gtggttgcctcaagagatttataatctcctttttatcatcttctcttccattgatatttgattctaacaaaaaagag 3282640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 2989346 - 2989289
Alignment:
Q  139 tcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacat 196  Q
    |||||||| |||||||| || |||||||| ||| ||||||||||||| ||||||||||    
T  2989346 tcttctcttccaatgatctcagattctaacacataagagcaagtttccctccttacat 2989289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 9851196 - 9851260
Alignment:
Q  131 ttttattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttaca 195  Q
    |||||| ||||||||| ||||||||||| ||||| || |||||||| | ||| ||||||||||||    
T  9851196 ttttatcatcttctcttccaatgatatccgattccaacacaaaagaactagtctctctccttaca 9851260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 3142250 - 3142307
Alignment:
Q  119 ttacaatctcttttttattatcttctctaccaatgatatctgattctaatacaaaaga 176  Q
    ||||||| || ||||||| ||| ||||| |||||||||||||| ||||| ||||||||    
T  3142250 ttacaatgtcatttttatcatcatctcttccaatgatatctgactctaacacaaaaga 3142307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 10755677 - 10755822
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgt---ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaa 151  Q
    ||||| |||||||||||||| |||| |||||||||||| |   ||  ||||| |||| |||| ||| ||| ||| |  ||||||| || |||||| ||||    
T  10755677 aaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaa 10755776  T
Q  152 tgatatctgattctaatacaaaagagcaagtttctctccttacatc 197  Q
    |||||| ||||||||| |||||||| | |||||| |||||||||||    
T  10755777 tgatatttgattctaacacaaaagaactagtttccctccttacatc 10755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 18355833 - 18355689
Alignment:
Q  55 aaaccgccaataccaacaatggcaatcaaggagacattgt----ttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctacca 150  Q
    ||||| |||||||||||||| |||| ||| |||||||| |    ||| ||||| ||||||||| ||  ||| |||||  |||||||  |||||||| |||    
T  18355833 aaaccaccaataccaacaatagcaaccaatgagacattctgatgttc-atgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttcca 18355735  T
Q  151 atgatatctgattctaatacaaaagagcaagtttctctccttacat 196  Q
    ||||| || |||||||| ||| ||||||||||||| ||||||||||    
T  18355734 atgatctcagattctaacacataagagcaagtttccctccttacat 18355689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 3919211 - 3919284
Alignment:
Q  94 tttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattctaa 167  Q
    |||| |||||||||| |||| ||  ||| |||||  ||||||| ||||||||| ||||||||||| ||||||||    
T  3919211 tttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgatatccgattctaa 3919284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University