View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_263 (Length: 214)
Name: NF1111_low_263
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_263 |
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Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 38128082 - 38127995
Alignment:
| Q |
1 |
aacctcaacataccacagaacacagatggttgaaaccccctgaagtaatgtcgattcgcccacacaaattggtcatcaagtaaagtca |
88 |
Q |
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| T |
38128082 |
aacctcaacataccgcagaacacagatggttgaaaacccctgaagtaatgtcgattcgcccacacaaattggtcatcaagtaaagtca |
38127995 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 38127771 - 38127725
Alignment:
| Q |
83 |
aagtcaatagggtcacacgtagccttgctagagcctccttatcctat |
129 |
Q |
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| T |
38127771 |
aagtcaataaggtcacatgtagccttgctagagcctccttatcctat |
38127725 |
T |
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