View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_27 (Length: 474)
Name: NF1111_low_27
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 50 - 440
Target Start/End: Original strand, 8306639 - 8307029
Alignment:
| Q |
50 |
gacagtatcatcattatttaaaattaaggtggggacaccgagtgtatttttgcctttagaatattcatcttttattggtgtaacttctaagatcgtggtg |
149 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8306639 |
gacaatatcatcattatttaaaattaaggtggggataccgagtgtatttttgcctttagaatattcatcttttgttggtgtaacttctaagatcgtggta |
8306738 |
T |
|
| Q |
150 |
ttttccctcgaaaataagatcgcggtaatcccctaaaagaatattgcggtattaatgctctatttaaattatatttagcctaaattatattcaagtactt |
249 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8306739 |
ttttccctcaaaaataagatcgtggtaatcccctaaaagaatattgcggtattaatgctctatttaaattatatttagcctaaattatattcaagtactt |
8306838 |
T |
|
| Q |
250 |
atccttgaatcaaaaatgttcacgtactaannnnnnnnctttcgttcggatggaatttacatatattctctaataagagaatctcatacacattttcttg |
349 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8306839 |
atccttgaatcaaaaatgttcacgtactaattttttttctttcgttcggatggaatttacatatattctctaataagagtatctcatacacattttcttg |
8306938 |
T |
|
| Q |
350 |
tgttatggacttcatatatttccactacgctaactccatcaatatctacatatttcattacttaggccatatgtcttattcaacttttaaa |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8306939 |
tgttatggacttcatatatttccactacgctaactccatcaatatctatatattttattacttaggccatatgtcttattcaacttttaaa |
8307029 |
T |
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