View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_273 (Length: 209)
Name: NF1111_low_273
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_273 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22618879 - 22618758
Alignment:
| Q |
1 |
tagaagtgtaagccactaggggatttttcgaagacatagttttctcacccttttatgaccttttctctcgcaagcaacttgctaactgcaggtgtaccat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22618879 |
tagaagtgtaagccactaagggatttttttaagacatagttttctcagccttttatgaccttttctctcgcaagcaacttgctaactacaggtgtaccat |
22618780 |
T |
|
| Q |
101 |
tatgaatccagatggccttcat |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22618779 |
tatgaatccagatggccttcat |
22618758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University