View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_283 (Length: 205)
Name: NF1111_low_283
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_283 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 52095324 - 52095451
Alignment:
| Q |
1 |
ctaaatcaagaaggcagtgaaacagcatcatcattacagtttatccggaaacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaacaaaa |
100 |
Q |
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| T |
52095324 |
ctaaatcaagaaggcagtgaaacagcatcatcattacagtttatccggaaacagtgaaacgaaagccatgtctccaatatcagtaaacacatcaataaaa |
52095423 |
T |
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| Q |
101 |
ctgcagtacatcaagaaacaatatgttg |
128 |
Q |
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| T |
52095424 |
ctgcagtacatcaagaaacaatatgttg |
52095451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 36410829 - 36410958
Alignment:
| Q |
1 |
ctaaatcaagaaggcagtgaaacagcatcatcattacagtttatccggaaacagtgaaacgaaagccatgtctccaatatcagtaaaca---catcaaca |
97 |
Q |
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| T |
36410829 |
ctaaatccagaaggcagcgaaacagcaacatcatgacattttatctggaagcagtgaaacgaaagccacgtcttcaatatcagtaaacacatcatcaaca |
36410928 |
T |
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| Q |
98 |
aaactgcagtacatcaagaaacaatatgtt |
127 |
Q |
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| T |
36410929 |
gaacttcagtgtatcaagaagcaatatgtt |
36410958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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