View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_29 (Length: 463)
Name: NF1111_low_29
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 40103379 - 40102916
Alignment:
| Q |
1 |
acacttattttctttcgatcaccgaaaatgtcaaggtgcataccaatggatcaactaaatcttgccacattccacaccattccctgttgcctatgcta-- |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40103379 |
acacttattttctttcgatcaccgaaaatgtcaaggtgcataccaatggatcaactaaatcttgccacattccacaccattccctgttgccaatgcgcat |
40103280 |
T |
|
| Q |
99 |
ctccactcgaactaaacaccgctaacatgtgtgtcaaatgtttacgctcaaaaaccaatatcacagaaggtttactcaagaaacttagactaacacattg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103279 |
ctccactcgaactaaacaccgctaacatgtgtgtcaaatgtttacgctcaaaaaccaatatcacagaaggtttactcaagaaacttagactaacacattg |
40103180 |
T |
|
| Q |
199 |
caccgaatgcgaatgctatttacaaccccccacttggatcaaactaataccacaatcaaaacagtttcttgcattttgtttgaagaaactagaacagaat |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103179 |
caccgaatgcgaatgctatttacaaccccccacttggatcaaactaataccacaatcaaaacagtttcttgcattttgtttgaagaaactagaacagaat |
40103080 |
T |
|
| Q |
299 |
atgaaattcaagagagttaggttagtacatgctgaaacccttccaactgaaccccactcgaaaattatcaaaatcaaggtttttgttcagaaagaggtta |
398 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103079 |
atgaaattcaagagagttaggttagtacatgctgaaacccttccatctgaacccgactcgaaaattatcaaaatcaaggtttttgttcagaaagaggtta |
40102980 |
T |
|
| Q |
399 |
tgaatggaacaatattggaacagtcttatgttgttgagtatgttcaatataatcgtatttgtga |
462 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40102979 |
taaatggaacaatattggaacagtcttatgttgttgagtatgttcaatataatcgtatttgtga |
40102916 |
T |
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