View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_290 (Length: 202)
Name: NF1111_low_290
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_290 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 35342155 - 35342008
Alignment:
| Q |
1 |
gatcaacagaatttcgatcaaattatcatgtacaaaaacaagagcaagagcttgtttgtataatgtttca-----tatgatgtaaaattgaatacggtgt |
95 |
Q |
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| T |
35342155 |
gatcaatagaatttcgatcaaattatcatgtacaaaaacaagagcaagagcttgtttgtataatgtttcatactgtatgatgtaaaattgaatacggtgt |
35342056 |
T |
|
| Q |
96 |
taattacactataggctatgtcaatgtcacgatgttattattttgttg |
143 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
35342055 |
taattagaccataggctatgtcaatgtcacgatgttattattttgttg |
35342008 |
T |
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