View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_3 (Length: 732)

Name: NF1111_low_3
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_3
NF1111_low_3
[»] chr3 (2 HSPs)
chr3 (30-255)||(29340635-29340854)
chr3 (581-659)||(21815994-21816073)
[»] chr7 (1 HSPs)
chr7 (581-659)||(21709243-21709323)
[»] chr6 (3 HSPs)
chr6 (581-667)||(5660077-5660165)
chr6 (575-659)||(21282896-21282981)
chr6 (493-530)||(20488258-20488295)
[»] chr5 (1 HSPs)
chr5 (545-601)||(24648809-24648865)
[»] chr4 (5 HSPs)
chr4 (594-721)||(16039506-16039638)
chr4 (581-659)||(35060347-35060426)
chr4 (593-659)||(702544-702611)
chr4 (593-659)||(756584-756651)
chr4 (593-659)||(770843-770910)
[»] chr1 (2 HSPs)
chr1 (581-659)||(51599327-51599406)
chr1 (581-632)||(16962095-16962146)
[»] chr8 (2 HSPs)
chr8 (593-721)||(39568336-39568469)
chr8 (581-659)||(44633668-44633747)
[»] scaffold0031 (2 HSPs)
scaffold0031 (593-659)||(123521-123588)
scaffold0031 (593-659)||(134397-134464)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 29340635 - 29340854
Alignment:
Q  30 gtttccatttacatgatcacagaaatggcatggcacgtgacaaagagagacttttccttttggtcatggcagcaagagacaagtccatgtttccgtagtt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||||    
T  29340635 gtttccatttacatgatcacagaaatggcatggcacgtgacaaagcgaggctcttccttttggtcatggcagcaagagacaggtccatgtttccgtagtt 29340734  T
Q  130 tagtgcagttcccatgaccccgctctcacttcacttcctcattataatattgcttaaatgccttgcataatcagcataagcattatatgttaaagcggaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||      || |||    
T  29340735 tagtgcagttcccatgaccccgctctcacttcacttcctcattataatattgtttaaatgccttgcataatcatcataagcattatat------gcagaa 29340828  T
Q  230 gttagcttgattgattcatgatctat 255  Q
    ||||||||| ||||| ||||||||||    
T  29340829 gttagcttggttgatccatgatctat 29340854  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 581 - 659
Target Start/End: Original strand, 21815994 - 21816073
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttatt-aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||||| | ||||||| |||||||| |||||||||| ||||||| |||||||||||| |||| || ||||||||||||    
T  21815994 aaatatgtctctgttacataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacacgtgtcatttt 21816073  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 659
Target Start/End: Original strand, 21709243 - 21709323
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttatt--aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||||| || |||||| |||||||| |||||||||| |||||||  |||||||||||| |||| || ||||||||||||    
T  21709243 aaatatgtcttcgttacataaattggtcccttccgttaattttattaaaaaaaacgttaactcaagcacacgtgtcatttt 21709323  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 667
Target Start/End: Complemental strand, 5660165 - 5660077
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttattaaaaa--acgttaagtcaaacaaacgtgtcattttgacattgg 667  Q
    |||||||| | ||||||| |||||||| |||||||||| ||||||||||||  | ||||| |||| || |||||||||||| |||||||    
T  5660165 aaatatgtctctgttacataaattggttccttccgttaattttattaaaaaatatgttaactcaagcacacgtgtcattttcacattgg 5660077  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 575 - 659
Target Start/End: Original strand, 21282896 - 21282981
Alignment:
Q  575 tctttgaaatatgtatttgttacacaaattggtaccttccgttagttttatt-aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    ||||| |||||||| | ||||||| |||||||| |||||||||| ||||||| |||||||||||| |||| || | ||||||||||    
T  21282896 tcttttaaatatgtctctgttacataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacatgtgtcatttt 21282981  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 530
Target Start/End: Original strand, 20488258 - 20488295
Alignment:
Q  493 ctaggttaattgttattttagtctcttaactatatttt 530  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  20488258 ctagcttaattgttattttagtctcttaagtatatttt 20488295  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 24648865 - 24648809
Alignment:
Q  545 atcccataattaatttttggtctgtttagatctttgaaatatgtatttgttacacaa 601  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||  |||||||||    
T  24648865 atcccataattaatttttggtctgtttagatcctttaaatatgcatccgttacacaa 24648809  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 594 - 721
Target Start/End: Complemental strand, 16039638 - 16039506
Alignment:
Q  594 ttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcattttgacattggctaaattttttgttcatatgctt-- 690  Q
    ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||  |||||| || | ||| | ||||| | |||      
T  16039638 ttacataaattggtcccttccgttaattttattaaaaaaacgttaactcaaacacacatgtcattttcgcattggttagaatttatattcatcttcttcc 16039539  T
Q  691 --ctcaccttcatcatcttcaaccaaccttcat 721  Q
      |||||||||||| |||||||| || ||||||    
T  16039538 tcctcaccttcatcttcttcaacaaatcttcat 16039506  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 659
Target Start/End: Complemental strand, 35060426 - 35060347
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||||| | ||||||| |||||||| |||||||||| ||||||||| ||||| |||| |||| || ||||||||||||    
T  35060426 aaatatgtctctgttacataaattggtcccttccgttaattttattaaaaaaacattaactcaagcacacgtgtcatttt 35060347  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 702611 - 702544
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||| |||||||| |||||||||| ||||||||| |||| ||||| |||| || ||||||||||||    
T  702611 gttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcatttt 702544  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Original strand, 756584 - 756651
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttatt-aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||| |||||||| |||||||||| ||||||| |||||| ||||| |||| || ||||||||||||    
T  756584 gttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcatttt 756651  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Complemental strand, 770910 - 770843
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||| |||||||| |||||||||| ||||||||| |||| ||||| |||| || ||||||||||||    
T  770910 gttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcatttt 770843  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 581 - 659
Target Start/End: Complemental strand, 51599406 - 51599327
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||||| || |||||| |||||||| |||||||||| ||||||||| |||||||||| |||| || || |||||||||    
T  51599406 aaatatgtcttcgttacataaattggtcccttccgttaattttattaaaaaaacgttaactcaagcacacatgtcatttt 51599327  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 632
Target Start/End: Original strand, 16962095 - 16962146
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttattaaaaaa 632  Q
    |||||||| || |||||| |||||||| |||||||||| |||||||||||||    
T  16962095 aaatatgtcttcgttacataaattggtcccttccgttaattttattaaaaaa 16962146  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 721
Target Start/End: Complemental strand, 39568469 - 39568336
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcattttgacattggctaaattttttgttcatatgctt- 690  Q
    |||||| |||||||| | |||||||| ||||||||| |||||||||| |||| || ||||||||||||  |||||| | || ||| | ||||| | |||     
T  39568469 gttacataaattggtccattccgttaattttattaaaaaaacgttaactcaagcacacgtgtcattttcgcattggttgaaatttatattcatcttcttc 39568370  T
Q  691 ---ctcaccttcatcatcttcaaccaaccttcat 721  Q
       |||||||||||| |||||||| || ||||||    
T  39568369 ctcctcaccttcatcttcttcaacaaatcttcat 39568336  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 659
Target Start/End: Complemental strand, 44633747 - 44633668
Alignment:
Q  581 aaatatgtatttgttacacaaattggtaccttccgttagttttattaa-aaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||||| | | ||||| ||||||||  ||||||||| ||||||||| |||||||||| |||| || ||||||||||||    
T  44633747 aaatatgtctcttttacataaattggtctcttccgttaattttattaaaaaaacgttaactcaagcacacgtgtcatttt 44633668  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Original strand, 123521 - 123588
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttatt-aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||| |||||||| |||||||||| ||||||| |||||| ||||| |||| || ||||||||||||    
T  123521 gttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcatttt 123588  T

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Target: scaffold0031; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 659
Target Start/End: Original strand, 134397 - 134464
Alignment:
Q  593 gttacacaaattggtaccttccgttagttttatt-aaaaaacgttaagtcaaacaaacgtgtcatttt 659  Q
    |||||| |||||||| |||||||||| ||||||| |||||| ||||| |||| || ||||||||||||    
T  134397 gttacataaattggtcccttccgttaattttattaaaaaaatgttaactcaagcacacgtgtcatttt 134464  T

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