View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_30 (Length: 457)
Name: NF1111_low_30
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 49 - 426
Target Start/End: Complemental strand, 1936758 - 1936381
Alignment:
| Q |
49 |
gctgttgcaccaagggaggcaatgcttaacatgaacctagaactgtgttcaatcagcaatatttttgagtttataattgttgattcttgtattcatatga |
148 |
Q |
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| T |
1936758 |
gctgctgcaccaagggaggcaatgcttaacatgaacctagaactgtgttcaatcagcaatatttttgagtttataattgttgattcttgtattcatatga |
1936659 |
T |
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| Q |
149 |
tcggtggtttgtttcttaacgccatatttacataacaattctgagactactagttgcagagaatatttttaggcactaagcatttatgtgatgtccttat |
248 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1936658 |
tcggtggtttgtttcttaacgacatatttacataacaattctgagactactagttgcagagaatatttttaggcactaagcatttatgtgatgtccttat |
1936559 |
T |
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| Q |
249 |
tacagtaaaaacgtgagtttaaccttactactaacagaaagcaccaagattgtgtttgtgtttattgcagaannnnnnnnnnnnnnnnnnnnctgtcatg |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1936558 |
tacagtaaaaacgtgagtttaaccttactactaacagaaagcaccaagattgtgtttgtgtttattgcagaagtgtgtgtgtgtgtgtgtgtctgtcatg |
1936459 |
T |
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| Q |
349 |
cagcatgtaacaggaagtgaaaccagccacatattgacgtgaaaatctaaaagcctagtacaaaacatatacaaattg |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1936458 |
cagcatgtaacaggaagtgaaaccagccacatattgacgtgaaaatctaaaagcctagtacaaaacatatacaaattg |
1936381 |
T |
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