View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_32 (Length: 454)
Name: NF1111_low_32
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 126 - 424
Target Start/End: Complemental strand, 32266822 - 32266522
Alignment:
| Q |
126 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcatcaaccttcttcttcttctgt |
225 |
Q |
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| T |
32266822 |
tttgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcagcaaccttcttcttcttctgt |
32266723 |
T |
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| Q |
226 |
taatggcggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagag--annnnnnnggtcata |
323 |
Q |
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| T |
32266722 |
taatggtggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagagtattttttttggtcata |
32266623 |
T |
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| Q |
324 |
agggtcgttttgtttctgaatcttctgataataacaatgagattgttttagagacgaaatcgaagattgttatcagaaatggtaacaaatttgtagctaa |
423 |
Q |
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| T |
32266622 |
agggtcgttttgtttctgaatcttctgataataacaatgagattgttctagagacgaaatccaagattgttatcagaaatggtaacaaatttgtagctaa |
32266523 |
T |
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| Q |
424 |
t |
424 |
Q |
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| T |
32266522 |
t |
32266522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 32266921 - 32266852
Alignment:
| Q |
30 |
gacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266921 |
gacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
32266852 |
T |
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