View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_33 (Length: 453)
Name: NF1111_low_33
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 30 - 447
Target Start/End: Original strand, 23145363 - 23145780
Alignment:
| Q |
30 |
ggtaggtattaaaaagctcaatgaaagggttagcatctggtttgtattgaaaggagagggaaaggtaaatttcaatcccttataatagggcttaaggatg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23145363 |
ggtaggtattaaaaagctcaatgaaagggttagcatctggtttgtattgaaaggagagggaaaggtaaatttcaatcccttataatagggcttaaggatg |
23145462 |
T |
|
| Q |
130 |
tagatttattcgctagttatttaaattcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23145463 |
tagatttattcgctagttatttaaattcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatc |
23145562 |
T |
|
| Q |
230 |
tagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23145563 |
tagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcact |
23145662 |
T |
|
| Q |
330 |
ctgctaaaataattatcggtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaag |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23145663 |
ctgctaaaataattatcggtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaag |
23145762 |
T |
|
| Q |
430 |
atcatcttttcatctcac |
447 |
Q |
| |
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||||||||||| |||||| |
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| T |
23145763 |
atcatcttttcttctcac |
23145780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 49 - 440
Target Start/End: Original strand, 23148219 - 23148611
Alignment:
| Q |
49 |
aatgaaagggttagcatctggtttgtattgaaaggagagggaaaggtaaatttcaatcccttataatagggcttaaggatgtagatttattcgctagtta |
148 |
Q |
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|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
23148219 |
aatgcaagggctagcatctggttttcattgaaaggagagggaaaggtaaatttcaatcccttataatagggtttaaggatgtagatttcttcgctagtta |
23148318 |
T |
|
| Q |
149 |
tttaaa-ttcgggaactgatttgaatattataaattagagattaaattaagattgaatgaaaactatttactatatgcaatctagtaaacatggttaagt |
247 |
Q |
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|||||| || ||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| |||| |||||||||||||||||||||||||| |
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| T |
23148319 |
tttaaaatttgggaactgatttgaatattttaaattagtgattaaattaagattaaacgaaaactattgactaaatgcaatctagtaaacatggttaagt |
23148418 |
T |
|
| Q |
248 |
tgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgctaaaataattatcg |
347 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |
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| T |
23148419 |
tgaacaatcttcatttattttaactcttattgccaagcatagcccacttatttcgaccggaagaaggtatgttttcggcactctgctaaaaacattattg |
23148518 |
T |
|
| Q |
348 |
gtacactggcaaagttttcagtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataaaagatcatcttttc |
440 |
Q |
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| T |
23148519 |
gtacacttgcaaagttttcagtttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatcttttc |
23148611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 446
Target Start/End: Original strand, 23035810 - 23036029
Alignment:
| Q |
228 |
tctagtaaacatggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggca |
327 |
Q |
| |
|
||||| ||| |||| |||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||| || | |||||||| | ||||| | |
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| T |
23035810 |
tctagaaaatatggataagttacacaatcttcatttattttaactcttatagccaaacatagcctacttatttctaccgacggaaggtatctgttcggta |
23035909 |
T |
|
| Q |
328 |
ctctgctaaaataattatcggtacactggcaaagttttca-gtttcttctcgtgaagctcatgtaccttgcaaaggattataaacaaaagggcacaataa |
426 |
Q |
| |
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||||||||||| |||| |||| |||| ||||| ||| | |||| ||| |||||||||| | | |||| ||||| ||||||| ||| ||||||| |
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| T |
23035910 |
ctctgctaaaaatattacaggtaaactgccaaaggtttaatttttcgtcttatgaagctcatatgacatgcagaggatgataaacagaagaaaacaataa |
23036009 |
T |
|
| Q |
427 |
aagatcatcttttcatctca |
446 |
Q |
| |
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||| ||||| |||| ||||| |
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| T |
23036010 |
aagttcatcctttcttctca |
23036029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 23139855 - 23139907
Alignment:
| Q |
396 |
gcaaaggattataaacaaaagggcacaataaaagatcatcttttcatctcact |
448 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||| ||||||| |
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| T |
23139855 |
gcaaaggatgacaaacaaaaggcaacaataaaagatcatcttttcttctcact |
23139907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 23016597 - 23016677
Alignment:
| Q |
48 |
caatgaaagggttagcatctggtttgtattgaaaggagagggaaaggtaaatttcaatcccttataatagggcttaaggatg |
129 |
Q |
| |
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||||| |||| ||||||| | |||| ||||||| || |||||||||| || || |||||||||||||||| |||||||||| |
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| T |
23016597 |
caatgcaaggtttagcatttagtttttattgaatgg-gagggaaaggcaatttgaaatcccttataataggacttaaggatg |
23016677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Original strand, 23038851 - 23038900
Alignment:
| Q |
397 |
caaaggattataaacaaaagggcacaataaaagatcatcttttcatctca |
446 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
23038851 |
caaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctca |
23038900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 376
Target Start/End: Original strand, 23023249 - 23023385
Alignment:
| Q |
238 |
atggttaagttgaacaatctttatttattttaactcttatagccaagcatagccaacttatttcgactggaagaaggtatgttttcggcactctgct-aa |
336 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| || ||| || |||||||||| |||| || || | ||||||||| ||||| ||||| |||| || |
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| T |
23023249 |
atggttaatttgaacaatcttcatttattttaagtcatattgctgagcatagccat-ttatatctaccgacagaaggtatcttttcagcactgtgcttaa |
23023347 |
T |
|
| Q |
337 |
aataattatcggtacactggcaaagttttcagtttcttct |
376 |
Q |
| |
|
|||| || | ||| |||| |||| ||||||||||||||| |
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|
| T |
23023348 |
aatatttgt--gtatactgccaaaattttcagtttcttct |
23023385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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