View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_36 (Length: 447)
Name: NF1111_low_36
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 105 - 437
Target Start/End: Original strand, 27105060 - 27105392
Alignment:
| Q |
105 |
agtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
204 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105060 |
agtaaaaatcttaatccctcctttcatagatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
27105159 |
T |
|
| Q |
205 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105160 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
27105259 |
T |
|
| Q |
305 |
tacttagcatcctggattcctcgttataattcgtctccaacgtgttgattgaatttttgataaaatcagtggtggaagcaatgtttttagtctctcttat |
404 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105260 |
tacttagcatcctggattcctctttataattcgtctccaacgtgttgattgaatttttgataaaatcagtggtggaagcaatgtttttagtctctcttat |
27105359 |
T |
|
| Q |
405 |
taggttaataatttcatagagtggcctttcatc |
437 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27105360 |
taggttaataatttcatagagtggcctttcatc |
27105392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 105 - 437
Target Start/End: Original strand, 27098061 - 27098393
Alignment:
| Q |
105 |
agtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcat |
204 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||| ||||||| |
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| T |
27098061 |
agtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggagatgtaaaaatgctaatttcaattgacgcaaacatgttgcat |
27098160 |
T |
|
| Q |
205 |
ggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccgg |
304 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27098161 |
ggtgctggtactaaattcactgcttcgttcccaccaaaatctacatttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccag |
27098260 |
T |
|
| Q |
305 |
tacttagcatcctggattcctcgttataattcgtctccaacgtgttgattgaatttttgataaaatcagtggtggaagcaatgtttttagtctctcttat |
404 |
Q |
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|||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
27098261 |
tacttaccatccttgattcctcgttataattagtctccaacgtgttgattgaatttttgacaaaatcagtggtggaagcaatgtttttagtctctctgat |
27098360 |
T |
|
| Q |
405 |
taggttaataatttcatagagtggcctttcatc |
437 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
27098361 |
gagcttaataatttcatagagtggcctttcatc |
27098393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 303
Target Start/End: Original strand, 27045325 - 27045525
Alignment:
| Q |
106 |
gtaaaaatcttaatccctcctttcattgatggatcatcattgtcaaatttattaggaggtgtaaaaatgctcatttccatggacgcaaacaagttgcatg |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||| || ||||||| | ||||| |||||||||| |||||||| |
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| T |
27045325 |
gtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcacccttccaaagacgcaaacatgttgcatg |
27045424 |
T |
|
| Q |
206 |
gtgctggtactaaattcactgcttcatgcccaccaaaatcta---catctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
302 |
Q |
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|||||||||| |||||||||| ||||| ||| |||||||||| || | |||||| |||||||||||| |||||||| ||||||| |||||| ||||| |
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| T |
27045425 |
gtgctggtacaaaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcacc |
27045524 |
T |
|
| Q |
303 |
g |
303 |
Q |
| |
|
| |
|
|
| T |
27045525 |
g |
27045525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 302
Target Start/End: Original strand, 27069430 - 27069530
Alignment:
| Q |
199 |
ttgcatggtgctggtactaaattcactgcttcatgcccaccaaaatctacatctccatcaagaaaacctaaatgtttccactctgtcagaaccgttactg |
298 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| || |||||||||| || | ||| ||||||| ||||| ||||||||||||| ||| ||||||| |
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| T |
27069430 |
ttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctatattttcat---gaaaacccaaatgcttccactctgtcaaaactgttactg |
27069526 |
T |
|
| Q |
299 |
cacc |
302 |
Q |
| |
|
|||| |
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|
| T |
27069527 |
cacc |
27069530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 27062421 - 27062463
Alignment:
| Q |
260 |
gaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
302 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
27062421 |
gaaaacccaaatgtttccactctgttagaaccgttactgcacc |
27062463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 27069602 - 27069671
Alignment:
| Q |
368 |
aatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatc |
437 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||| | || || |||| |||||||||||||||| ||||||| |
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| T |
27069602 |
aatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatc |
27069671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 27045583 - 27045661
Alignment:
| Q |
358 |
tttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcat |
436 |
Q |
| |
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||||||| | ||||||||| ||||||||| ||||||| |||| | || | |||| |||||||||||||||| |||||| |
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| T |
27045583 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcat |
27045661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 27056458 - 27056559
Alignment:
| Q |
333 |
attcgtctccaacgtgttgattgaatttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctt |
432 |
Q |
| |
|
|||||||||||| | ||| ||||| ||| ||| | |||||| || ||||||| |||||||||||| | || || |||| |||||||||||||||| || |
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| T |
27056458 |
attcgtctccaaagagtttattgagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatt |
27056557 |
T |
|
| Q |
433 |
tc |
434 |
Q |
| |
|
|| |
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|
| T |
27056558 |
tc |
27056559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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