View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_4 (Length: 654)
Name: NF1111_low_4
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 30 - 647
Target Start/End: Original strand, 52422771 - 52423388
Alignment:
| Q |
30 |
ctaggaaatatgttgttttaataaatcaaaacgtgagaaatagtgacaagcttttgagtttatttaacaatattttggtgtagtgatcattacattgatt |
129 |
Q |
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| T |
52422771 |
ctaggaaatatgttgttttaataaatcaaaacgtgagaaatagtgacaagcttttgagtttatttaacaatattttggtgtagtgatcattacattgatt |
52422870 |
T |
|
| Q |
130 |
taagatttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataatgcaagttacttatattgggagacactgcatgttcaattctaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52422871 |
taagatttgactccttcaataatacaggaaagaaaaaacgttagttatcatttataaggcaagttacttatattgggagacactgcatattcaattctaa |
52422970 |
T |
|
| Q |
230 |
attacaacagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttag |
329 |
Q |
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| T |
52422971 |
attacaacagaaatccaatattatgtgttcccacgagtgcttttgtttaaattcttaataatgcgaaaaattgggtcgaatttaatcaccaacctcttag |
52423070 |
T |
|
| Q |
330 |
gtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctttgaatagaag |
429 |
Q |
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| T |
52423071 |
gtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctgtgaatagaag |
52423170 |
T |
|
| Q |
430 |
atgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgnnnnn |
529 |
Q |
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| T |
52423171 |
atgacaacataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaa |
52423270 |
T |
|
| Q |
530 |
nncctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaa |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423271 |
aacctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaa |
52423370 |
T |
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| Q |
630 |
ggggattcgtctgtggtg |
647 |
Q |
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|||||||||||| ||||| |
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| T |
52423371 |
ggggattcgtctctggtg |
52423388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 296 - 520
Target Start/End: Original strand, 42715940 - 42716166
Alignment:
| Q |
296 |
aaaattgggtcgaatttaatcaccaacctcttaggtctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctg |
394 |
Q |
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| T |
42715940 |
aaaattgggtc-aatttaatcaccaacctcttaggtctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctg |
42716038 |
T |
|
| Q |
395 |
agtagagcaacttcttcca-attctttgaatagaagatgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tcc |
492 |
Q |
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||||||| |||||||| || || |||| ||||||||||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| ||| |
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| T |
42716039 |
agtagagaaacttcttacagtttttttgtatagaagatgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctcc |
42716138 |
T |
|
| Q |
493 |
agttccttagattacaagtttccaagtc |
520 |
Q |
| |
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| T |
42716139 |
aattccttagattacaagtttccaagtc |
42716166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 42715493 - 42715529
Alignment:
| Q |
176 |
atcatttataatgcaagttacttatattgggagacac |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
42715493 |
atcatttataatgcaaattacttatattgggagacac |
42715529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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