View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_42 (Length: 431)
Name: NF1111_low_42
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 34743125 - 34742774
Alignment:
| Q |
13 |
aatatcacaggaataagaattgtacatataatgttgatggagggaccaaattgtcagattatcaaattggcgaatcacttctacaaaatagtaaaaatag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34743125 |
aatatcacaggaataagaattgtacatataatgttgatggagggaccaaattgtcagattatcaaattggcgaatcacttctacaaaatagtaaaaatag |
34743026 |
T |
|
| Q |
113 |
agcaccaaaactacaatcatgcctaagttaaatgtacttcaaaactaatcggaatttagaaagnnnnnnnn-cttagtgcaacaattagcttatgatggt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34743025 |
agcaccaaaactacaatcatgcctaagttaaatgtacttcaaaactaatcggaatttagaaagaaaaaaaagcttagtgcaacaattagcttatgatggt |
34742926 |
T |
|
| Q |
212 |
agacctccaccattagtgatgagcataaagccattcaagaccaaattctacaacttttgatctcttgccaagttgaaagaagaaaagaaatgaagaactc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34742925 |
agacctccaccattagtgatgagcataaagctattcaagaccaaattctacaacttttgatctcttgccaagtagaaagaagaaaagaaatgaagaactc |
34742826 |
T |
|
| Q |
312 |
aattactaatagtctaacaatatcctttatttaagtaaagtagaacattaat |
363 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34742825 |
aattactaatagtctaacaatatcctatatttaagtaaagtagaacattaat |
34742774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 24262683 - 24262760
Alignment:
| Q |
251 |
accaaattctacaacttttgatctcttgccaagttgaaagaagaaaagaaatgaagaactcaattactaatagtctaa |
328 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
24262683 |
accaaagtctacaacttttgatctattgccgagtagaaagaagaaaagaaattaagacctcaattactaataatctaa |
24262760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 328
Target Start/End: Original strand, 24273313 - 24273390
Alignment:
| Q |
251 |
accaaattctacaacttttgatctcttgccaagttgaaagaagaaaagaaatgaagaactcaattactaatagtctaa |
328 |
Q |
| |
|
|||||| || |||||||||||||| ||| | ||| ||||||||||| ||||| | || ||| |||||||||| ||||| |
|
|
| T |
24273313 |
accaaagtcaacaacttttgatctattgtcgagtagaaagaagaaaggaaattacgacctccattactaataatctaa |
24273390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University