View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_45 (Length: 423)
Name: NF1111_low_45
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 29 - 412
Target Start/End: Original strand, 14256526 - 14256909
Alignment:
| Q |
29 |
acacctaaaaccttgcaatcacacatcaataaacaagctgcaattgcacaaaacaccaactactatactaatacacacatacatcgaaacaaatcctcaa |
128 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14256526 |
acacctaaaaccttgcaagcacgcatcaataaacaagctgcaattgcacaaaacaccaactactatactaatacacacatacatcgaaacaaatcctcaa |
14256625 |
T |
|
| Q |
129 |
gaaatacaacaattcggacaccgaatcaatccattttcattacaaaccaaacacctcttcaacaactcttcatcctcatcaaaaatcttcttacttccac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14256626 |
gaaatacaacaattcggacaccgaatcaatccattttcattacaaaccaaacacctcttcaacaacccttcatcctcatcaaaaatcttcttacttccac |
14256725 |
T |
|
| Q |
229 |
aacaattcccacacggcaaaaacctaacaccaccacagctctcacaaacatacccacctttcgtctttggaaacccctccaaaagcttccccaaatcacc |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14256726 |
aacaattcccacacggcaaaaacctaacaccaccgcagctctcacaaacatacccacctttcgtctttggaaacccctccaaaagcttccccaaatcacc |
14256825 |
T |
|
| Q |
329 |
aacctcacaaagctgctttatcacctcagcaccacccacatgattccctcgaataaaaacctgcggcaacgtcacattcttcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14256826 |
aacctcacaaagctgctttatcacctcagcaccacccacatgattccctcgaataaaaacctgcggcaacgtcacattcttcat |
14256909 |
T |
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