View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_51 (Length: 417)
Name: NF1111_low_51
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 77 - 324
Target Start/End: Original strand, 28649061 - 28649306
Alignment:
| Q |
77 |
agataattctaagtagatggtggctctagctataaggaaccgaaaaaattaatggaaataagggtattaacaaccaaagaatataatgttatcattgatt |
176 |
Q |
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| T |
28649061 |
agataattctaagtaggtggtggctctagctataagcaaccgaaaaaattaatggaaataaggatattaacaaccaaagaatat--tgttatcattgatt |
28649158 |
T |
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| Q |
177 |
agaagggctaatgcatgcttaatgttaaaagtaagagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagcaaacaa |
276 |
Q |
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| T |
28649159 |
agaatggttaatgcttgcttaatgttaaaagtaagagtataccaccaaatttgtctaggattttccacactttttcttatttggtctttcaagcaaacaa |
28649258 |
T |
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| Q |
277 |
aaataacatatagtttatgcctgttgagtatggctcataggcagtgtc |
324 |
Q |
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| T |
28649259 |
aaataacatatagtttatgcttgttgagtatggctcataggcagtgtc |
28649306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 113 - 324
Target Start/End: Original strand, 28639794 - 28640004
Alignment:
| Q |
113 |
gaaccgaaaaaattaatggaaataa--gggtattaacaaccaaagaatataatgttatcattgattagaagggctaatgcatgcttaatgttaaaagtaa |
210 |
Q |
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| T |
28639794 |
gaaccgaaaaaattaattgaaatatatggatattaacaaccaaagcatataatgccatcattgattagaaggggtaatgc----ttaatgtttaaagtaa |
28639889 |
T |
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| Q |
211 |
gagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagc-aaacaaaaataacatatagtttatgcctgttgagtatgg |
309 |
Q |
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| T |
28639890 |
gagtacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagcaaaaaaaaaataacatatggtctatgactattgagtatgg |
28639989 |
T |
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| Q |
310 |
ctcataggcagtgtc |
324 |
Q |
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| T |
28639990 |
aacataggcagtgtc |
28640004 |
T |
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Back To:
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