View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_56 (Length: 414)
Name: NF1111_low_56
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 405
Target Start/End: Complemental strand, 17973435 - 17973060
Alignment:
| Q |
30 |
gaaatgacacatataagatcacatgatttgcaggaggtttacagtaaataattatgcatttttacttacaattgtcagagtgtagaagattataatgata |
129 |
Q |
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| T |
17973435 |
gaaatgacacatataagatcacatgatttgcaggaggtttacagtaaataattatgcatttttacttacaattgtcagagtgtagaagattataatgata |
17973336 |
T |
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| Q |
130 |
attagcatacaatggtatacatatatatcagggcagggaagtgtctacctgataaatgtattcatccacggaacaatggtgcattggcaccatattgtca |
229 |
Q |
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| T |
17973335 |
attagcatacaatggtatacatatatatcagggcagggaagtgtctacctgataaatgtattcatccacggaacaatggtgcattggcaccatattgtcg |
17973236 |
T |
|
| Q |
230 |
accaccttatcatactttctgactttctacttaaataagctgaacatgagctacttttgaccagtcctcgcctatatcattctggcatcgtttctctatc |
329 |
Q |
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| T |
17973235 |
accaccttatcatactttctgactttctacttaaataagctgaacatgagttacttttgaccagtcctcgcctatatcattctggcatcgtttctctatc |
17973136 |
T |
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| Q |
330 |
tgagggcagcagctaataaacaatctttttagactattaagacattggatgctcgccggaagacagctagaataat |
405 |
Q |
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| T |
17973135 |
tgagggcagcagctaataaacaatctttttagactactaagacattggatgctcaccggaagacagctaaaataat |
17973060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 17925836 - 17926002
Alignment:
| Q |
231 |
ccaccttatcatactttctgactttctacttaaataagctgaacatgagctacttttgaccagtcctcgcctatatcattctggcatcgtttctctatct |
330 |
Q |
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||||| |||| ||||||| |||||||| || |||| |||||||||| |||| |||| |||||||||||||||| || || |||||||| |||||||| | |
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| T |
17925836 |
ccaccatatcctactttcctactttctatttcaatacgctgaacatgggctatttttaaccagtcctcgcctatttccttttggcatcgcttctctattt |
17925935 |
T |
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| Q |
331 |
gagggcagcagctaataaacaatctttttagactattaagacattggatgctcgccggaagacagct |
397 |
Q |
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|||||||||| |||| |||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
17925936 |
gagggcagcattgaatacacaatctttttagactgctaagatatcggatgctcgccggaagacagct |
17926002 |
T |
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