View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_57 (Length: 410)
Name: NF1111_low_57
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 5549099 - 5549409
Alignment:
| Q |
1 |
agtggaacatatctccacctctagaatggcataacgttcctcccaaaaccaagagcctagctcttgtggtgcaggatgttgacaccctggatccaactgg |
100 |
Q |
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| T |
5549099 |
agtggaatatatctccacctctagaatggcttaacgttcctcccaaaaccaagagcctagctcttttggtgcaggatgttgacaccgtggatccaactgg |
5549198 |
T |
|
| Q |
101 |
acgcacggtgccaatcacccattggatagtggtcaatattccggcaactttgactaagttgccagaaggattgtcgggaaaggaagatgaaatgggagat |
200 |
Q |
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| T |
5549199 |
acgcacggtgccaatcacccattgggtagtggtcaatattccggcaactttgacaaagttgccagaaggattgtcgggaaaggaagatgaaatgggagat |
5549298 |
T |
|
| Q |
201 |
gagtataatggaattgaagagggacttaatgactggaagatgaatttgtggcgtggtcctaagactcctaactatgctgataggtttgagtttaagctct |
300 |
Q |
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|||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5549299 |
gagtataatggaattgaagaaggagttaatgattggaaggtgaatttgtggcgtggtcctaagactcctaactatggtgataggtttgagtttaagctct |
5549398 |
T |
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| Q |
301 |
atgctttggat |
311 |
Q |
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||||||||||| |
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| T |
5549399 |
atgctttggat |
5549409 |
T |
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