View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_6 (Length: 643)
Name: NF1111_low_6
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 127 - 591
Target Start/End: Original strand, 23076819 - 23077289
Alignment:
| Q |
127 |
ctaagttaaaattgtcctgctttaactaacacaactaccatgtaacttccttaatacttttcccaatttgaagacgatggtataaatattaaagatatat |
226 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23076819 |
ctaagttaaaattgtcctgctctaactaacacaactaccatgtaacttgcctaatacttttcccaatttgaagacgatggtataaatattaaagatatat |
23076918 |
T |
|
| Q |
227 |
tgtaagatataatttttgtctaccatttgcttacattttaaacaattttattagtacaaaaactatcttaaaattgaactatttctctctcttcaaattg |
326 |
Q |
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| T |
23076919 |
tgtaagatttaatttttgtctaccatttgcttacattttaaacaattttattagtacaaaaactatcttcaaattgaactatttctctctcttcaaattg |
23077018 |
T |
|
| Q |
327 |
aactatctatttcacttgaaaaatagagaaatcctaatccaaaagaaacgaaccaggtccccacaata--tatatataaacaaattaaagatgaacagaa |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| || |
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| T |
23077019 |
aactatctatttcacttgaaaaatagagaaatcctaatccaaaagaaaccaaccaggtccccacaatatgtatatataagaaaaataaagatgaacaaaa |
23077118 |
T |
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| Q |
425 |
agtagacaaactctttattgggtagtaaaccattgatcatggtttcaataat----ataataataacaagtgtatacataataatcaaattagttaatgc |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23077119 |
agtagacaaactctttattgggtagtaaaccattgatcagggtttcaataataataattataataacaagtgtatacataataatcaaattagttaatgc |
23077218 |
T |
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| Q |
521 |
acaatcaccttgatccttgtcaagaatctagtnnnnnnnttaagataccccttcaaattttcttcatctca |
591 |
Q |
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| T |
23077219 |
acaatcaccttgatccttgtcaagaatctagtgaaaaaattaagataccccttcaaattttcttcttctca |
23077289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 23076560 - 23076671
Alignment:
| Q |
14 |
aggcattgataagagccatgcgccgggtaaaagtgttgtgtattggctagttgaatcctctcggtctagatagggtctaagtcattcagtcattcctcaa |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23076560 |
aggcattgataagagccatgcgtcgggtaaaagtgttgtgtattggctagttgaatcctctcggtctagatagggtctaagtctttcagtcattcctcaa |
23076659 |
T |
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| Q |
114 |
aggactttctat |
125 |
Q |
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|||||||||||| |
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| T |
23076660 |
aggactttctat |
23076671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 23076479 - 23076518
Alignment:
| Q |
50 |
tgtgtattggctagttgaatcctctcggtctagatagggt |
89 |
Q |
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| T |
23076479 |
tgtgtattggctagttgaatcctctcggtctagatagggt |
23076518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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