View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_61 (Length: 402)
Name: NF1111_low_61
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 391
Target Start/End: Original strand, 36753463 - 36753824
Alignment:
| Q |
30 |
aagccatcaccataaacacagctcaaatgcccctcatatcatatgtcttaggttaacatcccttcaacaaaaaagtcttagattaacatctcttctatat |
129 |
Q |
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| T |
36753463 |
aagccatcaccataaacacagctcaaatgcccctcatatcatatgtcttaggttaacatcccttcaacaaaaaagtcttaggttaacatctcttctatat |
36753562 |
T |
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| Q |
130 |
tggtgttcgtttgagatgttgaagtgttctactcctcagagtttcgtatccgattctttttcatgccgattttcgtatcaatatataaatatctaagtct |
229 |
Q |
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| T |
36753563 |
tggtgttcgtttgagatcttgaagtgttctactcctcagagtttcatatccgattctttctgatgccgattttcgtatcgatatataaatatctaagtct |
36753662 |
T |
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| Q |
230 |
gccaactccaattaatgaatcactatacacatcaatgtttgtccttggttgtgttaaagcatagctacgtgaaaatgagggaattatttactactaccac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36753663 |
gccaactccaattaatgaatcactatacacatcaatgtttgtccttggttgtgttaaagcatagctacgtgaaaatgagggaattatttactactactac |
36753762 |
T |
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| Q |
330 |
taccagtgccaacaagaagaaaagtgacacatccctgactttcacgaaagactaccattcat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
36753763 |
taccagtgccaacaagaagaaaagtgacacatccctgactttcacgaaagactgccaatcat |
36753824 |
T |
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