View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_62 (Length: 401)
Name: NF1111_low_62
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 122 - 330
Target Start/End: Original strand, 15591413 - 15591623
Alignment:
| Q |
122 |
agctgatgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagctttaccaccttaccgtctccacc |
221 |
Q |
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| T |
15591413 |
agctgatgatgattctacgcaaaatctgagccagatcagcaactcctttgagaaaacgttcggccttatccatcagctttaccaccttaccgtctccacc |
15591512 |
T |
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| Q |
222 |
ttgaacgttgtcttttaaatgtcactgca--ttttttataggtctttgtcttaacggtgatgatcaaaataccctgcactttcataatgactagcaaagc |
319 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
15591513 |
ttgaacgttgtctttcaaatgtcactgcattttttttataggtctttgtcttaacggtgatgatcagaataccctgcactttcatgatgactagcaaagc |
15591612 |
T |
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| Q |
320 |
aatttcatctc |
330 |
Q |
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||||||||||| |
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| T |
15591613 |
aatttcatctc |
15591623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 35445739 - 35445668
Alignment:
| Q |
128 |
tgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagct |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
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| T |
35445739 |
tgatgattctatgcaaaaccttagccagatcagcaactccattgagaaaaccctgggcctcatccatcagct |
35445668 |
T |
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