View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_63 (Length: 398)
Name: NF1111_low_63
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_63 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 490130 - 489762
Alignment:
| Q |
30 |
cctcatctcaccagcacctctaattccaacttgcaccaaatcttgagcctcaagatattcaaatgactgaattgccccaccattgtttagcatgttaacc |
129 |
Q |
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| T |
490130 |
cctcatctcaccagcacctctaattccaacttgcaccaaatcttgagcctcaagatattcaaatgactgaattgccccaccattgtttagcatgttaacc |
490031 |
T |
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| Q |
130 |
aaaccaataggagcaaacttcaaggactttttaggaaataaagtgactggagaaacagttataagctcaaagttgaatggctccaaagagatttcttcaa |
229 |
Q |
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| T |
490030 |
aaaccaataggagcaaacttcaaggactttttaggaaataaagtgactggagaaacagttataagctcaaagttgaatggctccaaagagatttcttcaa |
489931 |
T |
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| Q |
230 |
tttcagacggagagaaaagtttgagcttcttggcttggctgaaatacaaagcaaaaacttgaactccttcaatgggaattggattcttgccactgttcca |
329 |
Q |
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| T |
489930 |
tttcagatggagagaaaagtttcagcttcttggcttggctgaaatacaaagcaaaaacttgaactccttcaatgggaattggattctttccactgttcca |
489831 |
T |
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| Q |
330 |
ttcaatgtctttgatgttgatcttagttgataccgaatgtgaaaactcagaagcacatttgtttgatct |
398 |
Q |
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| T |
489830 |
ttcaatgtctttgatgttgatcttagttgataccgaatgtgaaaactcagaagcacatttgtttgatct |
489762 |
T |
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