View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_64 (Length: 398)
Name: NF1111_low_64
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_64 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 390
Target Start/End: Original strand, 47125672 - 47126030
Alignment:
| Q |
30 |
tcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaactatggagcacattttatcata |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47125672 |
tcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaactatggagcacattttatcata |
47125771 |
T |
|
| Q |
130 |
acaatttataaaattggacttgtataagtttaaaaaagtaatgtaactattattcgaatatatatataacttgagtgtaactcaagttctgaatctgatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47125772 |
acaatttataaaattggacttgtataagtttaaaaaaataatgtaactattattggtatatatatat--cttgagtgtaactcaagttctgaatctgatt |
47125869 |
T |
|
| Q |
230 |
tccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatcaccttttccttttt |
329 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47125870 |
tccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgaccttttatcatcttttccttttt |
47125969 |
T |
|
| Q |
330 |
tcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47125970 |
tcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
47126030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University