View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_70 (Length: 393)
Name: NF1111_low_70
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 41 - 366
Target Start/End: Original strand, 36961832 - 36962155
Alignment:
| Q |
41 |
tagagttataattaataaagaactaactttaattcaacggcacaaggtatgcataaagaggtcaagtaaaaagtttcactcagtaccactactatagcca |
140 |
Q |
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| T |
36961832 |
tagagttataattaataaagaactaacttcaattcaacggcacaaggtatgcataaagaggtcaagtaaaaagtttcattcagtaccactactatagcta |
36961931 |
T |
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| Q |
141 |
gtacctaccagcttaggaaacagacttgataaagccacaaatatagccagaattttgcaactcatgcaatggatgagaaggacccgttttaccaatgtta |
240 |
Q |
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| T |
36961932 |
gtacctaccagcttaggaaacatacttgataaagccacaaatatagccagaattttgcaactcatgcaatggatgagaaggacccgttttaccaatgtta |
36962031 |
T |
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| Q |
241 |
taatcttagtaaaggattttgattatttctgagaccgcctataatcaatttgagctgacatcggcatttggttatatgataaagaaattagttggaatga |
340 |
Q |
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| T |
36962032 |
taatcttagtaaagga--ttgattatttctgagaccacctataatcaatttgagctgacatcggcatttggttatatgataaagaaattagttggaatga |
36962129 |
T |
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| Q |
341 |
tatgatcacgattttaacttgttaat |
366 |
Q |
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| T |
36962130 |
tatgatcacgattttaacttgttaat |
36962155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 36962160 - 36962203
Alignment:
| Q |
323 |
agaaattagttggaatgatatgatcacgattttaacttgttaat |
366 |
Q |
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| T |
36962160 |
agaaattagttggaatgatatgatcaggaatttaacttgttaat |
36962203 |
T |
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