View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_73 (Length: 386)
Name: NF1111_low_73
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 306
Target Start/End: Complemental strand, 44976247 - 44976086
Alignment:
| Q |
140 |
gtgagtttaatctcatctaaaggaaaaacctcaaggttcatagtgttgcttatagagctacttacataatataatatccatcaacaaagtttttatacca |
239 |
Q |
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| T |
44976247 |
gtgagtttaatctcatctaaaggaaaaacctcaaggttcatagtgttgcttatagagctacttacataatat-----ccatcaacaaagtttttatacca |
44976153 |
T |
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| Q |
240 |
gctataaattaatatcacagttatctcttttgaattagaagttttaatattagatttattagtaggt |
306 |
Q |
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| T |
44976152 |
gctataaattaatatcacaattatctctttttaattagaagttttaatattagatttattagtaggt |
44976086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 44976432 - 44976294
Alignment:
| Q |
1 |
taaacaaatggaacaattgaataggccaagatatatctatgtggatttccctgttgtatatactttcacccaccaaaccctccaaatcagttcacaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44976432 |
taaacaaatggaacaattgaataggccaagatatatctatgtggatttccctgttgtatatactttcacccaccaaaccctccaaatcagttcacaataa |
44976333 |
T |
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| Q |
101 |
tcaaatggagcctaccttactgatcctcctactcctggc |
139 |
Q |
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| T |
44976332 |
tcaaatggagcctaccttactgaccctcctactcctggc |
44976294 |
T |
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