View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_74 (Length: 386)
Name: NF1111_low_74
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_74 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 30337452 - 30337105
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
30337452 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctcct |
30337353 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337352 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
30337253 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337252 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30337153 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337152 |
gaacagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
30337105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 30712355 - 30712008
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712355 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
30712256 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30712255 |
tgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttagtttgaaagaggtaaatcctctcagtcgaaaagactcgatcgagtac |
30712156 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712155 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30712056 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30712055 |
gaacagccttgatgtgaactaagttgtctgatagcttttgaacctttg |
30712008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 30750825 - 30751172
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750825 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
30750924 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30750925 |
tgtaatctcttttaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtacatcctctcagtcgacaagacttaatcgagtac |
30751024 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30751025 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30751124 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30751125 |
gaacagccttgatgcgaactaagttgtctgatagcttttgagcctttg |
30751172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 30061551 - 30061898
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061551 |
tttggcgcccttcagctacttgatctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
30061650 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30061651 |
tgtaatctctttgaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagacttgatcgagtac |
30061750 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061751 |
tcatcaaggatatcatcgagcacataaacaccatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30061850 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30061851 |
gaacagccttgatgtgaactaagttgtttgatagcttttgaacctttg |
30061898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 30484580 - 30484927
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30484580 |
tttggcgcccttcagctacttgatctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctcct |
30484679 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30484680 |
tgtaatctctttcaacctgttaccaatctcatggcgaaacatgatgttctttggtttgaaagaggtaaatcctctgagtcgacaagactcgatcgagtac |
30484779 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484780 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30484879 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484880 |
gaacagctttgatgtgaactaagttgtctgatagcttttgagcctttg |
30484927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 30676215 - 30675868
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676215 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
30676116 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| ||||| ||||||| ||| ||| ||||| ||| || ||| |
|
|
| T |
30676115 |
tgtaatctcttttaacctgttgccgatctcactgcgaaacatgatgttctttggtttgagagaggatgatcctctaagttgaccagacttgattgaatac |
30676016 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676015 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
30675916 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30675915 |
gaacagccttgatgtgaactaagttgtttgatagcttttgaacctttg |
30675868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 84 - 342
Target Start/End: Original strand, 29854544 - 29854802
Alignment:
| Q |
84 |
gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttgg |
183 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
29854544 |
gtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgccgatctcatggcgaaacatgatgttctttgg |
29854643 |
T |
|
| Q |
184 |
tttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccat |
283 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
29854644 |
tttgaaagaggttaatcctctaagttgaccagacttgattgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccat |
29854743 |
T |
|
| Q |
284 |
agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
342 |
Q |
| |
|
| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
29854744 |
accttaatagagtggtctgtgacttgtttcttttcagcatcttcaagaacagcattgat |
29854802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 84 - 342
Target Start/End: Original strand, 29873407 - 29873665
Alignment:
| Q |
84 |
gtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttgg |
183 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |
|
|
| T |
29873407 |
gtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgccgatctcaaggcgaaacatgatgttatttgg |
29873506 |
T |
|
| Q |
184 |
tttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccat |
283 |
Q |
| |
|
||| |||||| | ||||||| ||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| |||| |
|
|
| T |
29873507 |
tttaaaagagattgatcctctaagttgaccagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgtagccat |
29873606 |
T |
|
| Q |
284 |
agcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
342 |
Q |
| |
|
| |||||||||| | ||| ||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
29873607 |
accttaatagagcggtctgtgacttgtttcttttcagcatcttcaagaacagccttgat |
29873665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 30436992 - 30437324
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||| ||||| | || ||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
30436992 |
tttggcgcccttcagcagcttgatctgggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctccc |
30437091 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || ||||| || ||| ||||||||||| ||||| |||||| || |
|
|
| T |
30437092 |
tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagatgtgaattttctcagtcgactagacttgatcgaacac |
30437176 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||||| |||| |||| ||||||||||||| |
|
|
| T |
30437177 |
tcatcaaggatgtcatcgagcacataaacagcatctttgaggtcttgtagccataccttaatgaagttgtctttgacttgtctcttttcagcatcttcaa |
30437276 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||||||||||| ||||||| || |||||| |||| |||||||| |
|
|
| T |
30437277 |
gaacagccttgatgtcaactaaggtggttgataggttttcagcctttg |
30437324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 95 - 346
Target Start/End: Original strand, 30401321 - 30401572
Alignment:
| Q |
95 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
194 |
Q |
| |
|
||||||||| | |||||||||||||| || || ||||||||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||||||| |
|
|
| T |
30401321 |
ttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgttgccgatctgacggcgaaacacgatgttctttgggttgaaagaga |
30401420 |
T |
|
| Q |
195 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
294 |
Q |
| |
|
| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||| | |
|
|
| T |
30401421 |
atgagcctccaagtcgagcagactcgatcgaacactcatcaaggatatcatcgagcacataaacagcatctttgagttgttggagccataccttaatata |
30401520 |
T |
|
| Q |
295 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtga |
346 |
Q |
| |
|
| ||||||| |||| |||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
30401521 |
gctgtctttgacttgtctcttctcagcatctacaagaacagcctcgatgtga |
30401572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 91 - 341
Target Start/End: Original strand, 30207762 - 30208012
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
190 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || || |||||| | | ||| |||||||||||||||||||| |
|
|
| T |
30207762 |
aaacttgtttttactttcagcaatatcatctaacctccttgtaatctctttcaatcttttgccaatctcacgacaaaaaatgatgttctttggtttgaaa |
30207861 |
T |
|
| Q |
191 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
290 |
Q |
| |
|
|| | | | | |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||| | |
|
|
| T |
30207862 |
gatgatgaggcaataagtcgagcagactcgatcgagcactcatcaaggatatcatcgagcacataaacagcatctttgagttgttgtagccataccttta |
30207961 |
T |
|
| Q |
291 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttga |
341 |
Q |
| |
|
||||| | | ||| ||| |||| ||||||||||||||||| ||| |||| |
|
|
| T |
30207962 |
tagagcgattgatgacttgcttctgctcagcatcttcaagaacagcgttga |
30208012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 90 - 377
Target Start/End: Complemental strand, 30241245 - 30240973
Alignment:
| Q |
90 |
aaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaa |
189 |
Q |
| |
|
||||||| ||| | || |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30241245 |
aaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgttaccgatctcatggcgaaacttgag--------------- |
30241161 |
T |
|
| Q |
190 |
agaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagctta |
289 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| | ||| | ||||| |||| |
|
|
| T |
30241160 |
agaggttaatcctctcagtcgactagacttgatcgagcactcatcaaggatatcatcgagcacataaacaacatctttgagttgttgcagccatacctta |
30241061 |
T |
|
| Q |
290 |
atagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||| || ||||| | ||||| ||||||| |||||||||||||||| |
|
|
| T |
30241060 |
atagagcagtctgtgacttgtttcttctcagcatcttcaagaacggctttgatcatatctaaggtgtctgacagcttttgagcctttg |
30240973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 116 - 342
Target Start/End: Complemental strand, 17417509 - 17417283
Alignment:
| Q |
116 |
tcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaag |
215 |
Q |
| |
|
||||| || |||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||| ||| | ||||| || |||| || |
|
|
| T |
17417509 |
tcatcaaatctccttgtaatctcttccaacctttggccgatctcacggcgaaatatgatgttctttggtttgaaataggatgagcctctaagccgaccag |
17417410 |
T |
|
| Q |
216 |
actcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttctt |
315 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||| |||||||||| | ||| | ||||| ||| ||||| | ||| ||| |||||| | |
|
|
| T |
17417409 |
actcgattgagcactcatcaagaatatcatctagcacataaacaacatctttgagttgttgaagccataccttgttagagcgatctgtgacttgtttatg |
17417310 |
T |
|
| Q |
316 |
ctcagcatcttcaagaatagccttgat |
342 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
17417309 |
ctcagcatcttcaagaacagccttgat |
17417283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 372
Target Start/End: Complemental strand, 30329700 - 30329426
Alignment:
| Q |
95 |
ttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagagg |
194 |
Q |
| |
|
||||||||| |||||||||| | |||||| || || ||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30329700 |
ttgttcttattttcagcaatcttatctaatcttctggtaatttctttcaacctatt---gatctcatggcgaaatacaatgttctttggtttgaaagagg |
30329604 |
T |
|
| Q |
195 |
taaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaataga |
294 |
Q |
| |
|
| ||||| | ||||| |||||||||| || ||||||||||||||||||| |||||||| | | ||||||||| | ||| | ||||| ||||||||| |
|
|
| T |
30329603 |
atgagcctctaattcgaccagactcgatcaagcactcatcaaggatatcatcaagcacatatatatcatctttgatttgttgaagccatatcttaataga |
30329504 |
T |
|
| Q |
295 |
gagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctgatagcttttgagc |
372 |
Q |
| |
|
| | ||| || ||| || | |||| |||||||||||| | ||||||| || ||||| || ||||||||||||||| |
|
|
| T |
30329503 |
gcggtctgagacttgcttatgctcaacatcttcaagaacaaccttgataagatctaaggtggttgatagcttttgagc |
30329426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 91 - 342
Target Start/End: Original strand, 30476615 - 30476866
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
190 |
Q |
| |
|
|||||||| |||||||||||||| | ||| || ||||||||||| ||||||||||| || ||||| ||| |||||||| ||||||||| | |||||| |
|
|
| T |
30476615 |
aaacttgtctttactttcagcaatttgatcgaatctccttgtaatttctttcaaccttttgccgatgtcacggcgaaacacaatgttctttaggttgaaa |
30476714 |
T |
|
| Q |
191 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
290 |
Q |
| |
|
||| | || | |||| || ||| || || || | |||||||| |||||||| |||||||| |||||||||||||| | ||| | ||||| ||||| |
|
|
| T |
30476715 |
caggacgaggctttaagtctactagattcaatggaacattcatcaagaatatcatcaagcacatatacagcatctttgagttgttggagccataccttaa |
30476814 |
T |
|
| Q |
291 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgat |
342 |
Q |
| |
|
||||| | ||| ||| ||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
30476815 |
tagagcggtctgtgacctgtttctgctcagcatcttcaagaacagccttgat |
30476866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 16415393 - 16415432
Alignment:
| Q |
303 |
tgaattgtttcttctcagcatcttcaagaatagccttgat |
342 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
16415393 |
tgaattgtttctcctcagcatcttcaagagtagccttgat |
16415432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 29608394 - 29608335
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgtt |
150 |
Q |
| |
|
|||||| |||||||||||| ||| | ||| || |||||||||||||||||||||||||| |
|
|
| T |
29608394 |
aaactttttcttactttcaaaaatttgatcaaatctccttgtaatctctttcaacctgtt |
29608335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 30520322 - 30520207
Alignment:
| Q |
260 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg |
359 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| | ||||| || || |
|
|
| T |
30520322 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg |
30520223 |
T |
|
| Q |
360 |
atagcttttgagcctt |
375 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
30520222 |
atagctttagagcctt |
30520207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 30560662 - 30560547
Alignment:
| Q |
260 |
gcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatgtgaactaagttgtctg |
359 |
Q |
| |
|
||||||||||| | ||| | ||||| ||| |||||| | ||| | | |||||||||||||||||||||||||| |||||||| | ||||| || || |
|
|
| T |
30560662 |
gcatctttgagttgttgaagccatacctttatagagcggtctgttatttgtttcttctcagcatcttcaagaacggccttgatcaaatctaaggtggttg |
30560563 |
T |
|
| Q |
360 |
atagcttttgagcctt |
375 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
30560562 |
atagctttagagcctt |
30560547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 30520491 - 30520401
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30520491 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30520401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 30560831 - 30560741
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttcttt |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||| ||||| ||||| | || || | |||||||||| |||| |||||| |
|
|
| T |
30560831 |
aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacctagtgccaattttatggcgaaacatgatattcttt |
30560741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 20295509 - 20295162
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295509 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
20295410 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
20295409 |
tgtaatctctttaaacctgctaccgatctcatggcgaaacgcgatgttcattggtttgaaagagttaaatcctctcagtcgaccagactcgatcgagtac |
20295310 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20295309 |
tcatcaaggatatcaccgagcacataaacagcatctttgaggtcttgtaaccattgcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
20295210 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20295209 |
gaacagccttgatgtgaactaagttgtctgatagctttcgagcctttg |
20295162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 343
Target Start/End: Original strand, 52353201 - 52353453
Alignment:
| Q |
91 |
aaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaa |
190 |
Q |
| |
|
|||||||||||| |||||||||| | ||| || ||||||||||| |||||||| ||||| || || ||||| |||||| || || ||||||||||| |
|
|
| T |
52353201 |
aaacttgttcttcctttcagcaacttgatcgaatctccttgtaatttctttcaatctgtttccaatatcatgacgaaacacaatattttttggtttgaat |
52353300 |
T |
|
| Q |
191 |
gaggtaaatcctctcagtcgacaagactcgatcgagtactcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaa |
290 |
Q |
| |
|
|| | || || | ||||||| ||| | |||||| | |||||||||||||||||||| || ||||||||||||||||| | || | ||||| |||| |
|
|
| T |
52353301 |
gacgataaacccataagtcgactagatttgatcgaacattcatcaaggatatcatcgagaacgtaaacagcatctttgagttgctgaagccatactttaa |
52353400 |
T |
|
| Q |
291 |
tagagagttctttgaattgtttcttctcagcatcttcaagaatagccttgatg |
343 |
Q |
| |
|
||||| | ||| ||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52353401 |
tagagcggtctgtgacttgtttctgctcagcatcttcaagaactgccttgatg |
52353453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 377
Target Start/End: Original strand, 26708511 - 26708843
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
26708511 |
tttggcgcccttcagctacttgatatgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccc |
26708610 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || |||||||| ||| | ||||||||| ||||| ||||||| | |
|
|
| T |
26708611 |
tgtaatctctttcaacctgttaccgatcttatggcgaaac---------------tttaaagaggtgaattttttcagtcgactagacttgatcgagcat |
26708695 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||| ||||||| || ||| ||| |||| |||||||||||||||||| |
|
|
| T |
26708696 |
tcatcaaggatgtcatcgagcacatatacaacatctttgaggtcttgtagccataccttaataaagttgtctgtgacttgtctcttctcagcatcttcaa |
26708795 |
T |
|
| Q |
330 |
gaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||| ||| | |||| ||||||| || |||||| |||| |||||||| |
|
|
| T |
26708796 |
gaacggccctaatgtcaactaaggtggttgataggttttcagcctttg |
26708843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 25292874 - 25292566
Alignment:
| Q |
30 |
tttggcgcccttcagctacttgatctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctcct |
129 |
Q |
| |
|
|||||||| ||||||||||| | || | ||||||||| |||||||||| | ||| ||||||||||||| || ||||||||||||| || ||||| |
|
|
| T |
25292874 |
tttggcgctattcagctacttcagttgagctttccctaacagttccaccctgtcgaagaagaaacttgttcttagttgcagcaatatcatccaatctcct |
25292775 |
T |
|
| Q |
130 |
tgtaatctctttcaacctgttaccgatctcatggcgaaacttgatgttctttggtttgaaagaggtaaatcctctcagtcgacaagactcgatcgagtac |
229 |
Q |
| |
|
|||||||||||||||| |||| || || | |||| ||||| |||||||||||||||||||||||| | ||||| ||||||| ||| | |||| | || |
|
|
| T |
25292774 |
tgtaatctctttcaacttgttgccaatgtaatggtgaaacatgatgttctttggtttgaaagaggatgagcctctaagtcgactagatttgatcaatcac |
25292675 |
T |
|
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| | ||||| ||||| |||||||||| | ||| ||| |||||||| |||||||||||||| |
|
|
| T |
25292674 |
tcatcaaggatatcatcgagcacatatacaacatctttgagttgttgtagccataccttaatagagcgatctgtgacttgtttctgctcagcatcttcaa |
25292575 |
T |
|
| Q |
330 |
gaatagcct |
338 |
Q |
| |
|
||| ||||| |
|
|
| T |
25292574 |
gaacagcct |
25292566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 7100785 - 7100894
Alignment:
| Q |
230 |
tcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttcaa |
329 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||| | || | ||||| | ||||||| | ||| | ||||| ||||| ||||| ||||||| |
|
|
| T |
7100785 |
tcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcagccatatttgaatagagcggtctgttaattgcttcttttcagcgtcttcaa |
7100884 |
T |
|
| Q |
330 |
gaatagcctt |
339 |
Q |
| |
|
||| |||||| |
|
|
| T |
7100885 |
gaacagcctt |
7100894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 377
Target Start/End: Complemental strand, 7580457 - 7580308
Alignment:
| Q |
228 |
actcatcaaggatatcatcgagcacataaacagcatctttgaggtcttgtaaccatagcttaatagagagttctttgaattgtttcttctcagcatcttc |
327 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||| | || ||||||| | |||||| | || | ||||| ||||| ||||| |||| |
|
|
| T |
7580457 |
actcatcaaggatatcatcaagcacatacaccgcatctttgagttgctgcaaccatatttgaatagatcggtcagttaattgcttcttttcagcgtcttg |
7580358 |
T |
|
| Q |
328 |
aagaatagccttgatgtgaactaagttgtctgatagcttttgagcctttg |
377 |
Q |
| |
|
||||| ||||||||| | ||||| | |||||||||||||||||||| |
|
|
| T |
7580357 |
aagaacagccttgatcagttctaaggttcttgatagcttttgagcctttg |
7580308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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