View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_75 (Length: 385)

Name: NF1111_low_75
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_75
NF1111_low_75
[»] chr6 (3 HSPs)
chr6 (141-370)||(33986814-33987044)
chr6 (217-370)||(11074558-11074701)
chr6 (59-101)||(7546512-7546554)
[»] chr1 (4 HSPs)
chr1 (141-316)||(44719862-44720037)
chr1 (141-360)||(11060115-11060335)
chr1 (141-361)||(1408145-1408368)
chr1 (204-297)||(36395702-36395795)
[»] chr8 (8 HSPs)
chr8 (171-362)||(31074535-31074727)
chr8 (141-317)||(9625924-9626100)
chr8 (141-360)||(28525276-28525493)
chr8 (141-370)||(28005840-28006052)
chr8 (141-370)||(28063143-28063355)
chr8 (117-240)||(36033158-36033277)
chr8 (39-105)||(1579090-1579157)
chr8 (39-102)||(38387873-38387937)
[»] chr7 (1 HSPs)
chr7 (141-370)||(330412-330642)
[»] chr5 (5 HSPs)
chr5 (123-307)||(28864741-28864923)
chr5 (123-317)||(23772934-23773124)
chr5 (325-374)||(28864634-28864683)
chr5 (39-105)||(42742397-42742464)
chr5 (39-102)||(35847052-35847117)
[»] chr4 (5 HSPs)
chr4 (123-360)||(24745456-24745695)
chr4 (229-360)||(24752933-24753065)
chr4 (141-248)||(24753074-24753181)
chr4 (39-102)||(26500337-26500401)
chr4 (43-101)||(37707421-37707480)
[»] chr2 (4 HSPs)
chr2 (150-370)||(14886860-14887079)
chr2 (141-363)||(26585719-26585949)
chr2 (191-317)||(18675624-18675750)
chr2 (39-102)||(41958188-41958252)
[»] chr3 (1 HSPs)
chr3 (39-101)||(45181550-45181613)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 33987044 - 33986814
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    |||||||||||||||| ||||||| || | | || |||||||| || ||||| |||| ||||||||||||||||||||| |||  |||||||||||||||    
T  33987044 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 33986945  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 336  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||   ||||||||||||    
T  33986944 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttca---attgattattta 33986848  T
Q  337 caaatattgtccaagtatatttatctgggcatgt 370  Q
    |||||||||||| |||||||||||||||||||||    
T  33986847 caaatattgtcccagtatatttatctgggcatgt 33986814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 11074701 - 11074558
Alignment:
Q  217 attccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaac 316  Q
    ||||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||     ||||| |||||||      |||||||||||||||||| |    
T  11074701 attccttcatgctttcttctttttaatcttaatattaactttaaattatactattt-----tttaagaaagatt------ttcaagaatacatattcagc 11074613  T
Q  317 t----ttcaattattgattatttacaaatattgtccaagtatatttatctgggcatgt 370  Q
    |    |||||||   ||||||||||||||||||||| |||||||||||||| ||||||    
T  11074612 taaacttcaatt---gattatttacaaatattgtcctagtatatttatctgcgcatgt 11074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 7546512 - 7546554
Alignment:
Q  59 aaaaaaggcaccctttaactcacgaatcaccagagcagacacc 101  Q
    ||||||||||||| | |||||||||| ||||||||||||||||    
T  7546512 aaaaaaggcacccctcaactcacgaaccaccagagcagacacc 7546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 141 - 316
Target Start/End: Original strand, 44719862 - 44720037
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44719862 atatgaaaaattgtttcaagcttttagatctggttatgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatagtttcttcttttt 44719961  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaac 316  Q
    |||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  44719962 aatctcgatgttaacttcaaattatactatttcattttataagaaagattattagcttcaagaataccaattcaac 44720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 141 - 360
Target Start/End: Original strand, 11060115 - 11060335
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    |||| ||||||| |||||| |||| |||| |||||||||||||||| ||  |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  11060115 atatcaagaattatttcagactttcagatctggttatgaatcacattttttcaaattttgtatttgtatttcttgaattccttcatggtttcttcttttt 11060214  T
Q  241 aatctcaacgttaacttcaaattatactattt-cattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattt 335  Q
    |||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||| |||| |||||||||||||||||    ||||   |||||||||||    
T  11060215 aatctcaaggttaacttcaaattatactatttaaattttttaagaaagattgttatcttc-agaatacatattcaactaaacttca---attgattattt 11060310  T
Q  336 acaaatattgtccaagtatatttat 360  Q
    ||||||||||||| | |||||||||    
T  11060311 acaaatattgtcccaatatatttat 11060335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 141 - 361
Target Start/End: Original strand, 1408145 - 1408368
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatat-ggttatgaatcacatcttcccaaa-ttatgtatttgtatatcttgaattccttcatggtttcttcttt 238  Q
    |||||||||||| ||||| ||||| || | | ||||||||||||||| |||||||| || ||||||| |||||||| ||||||||||| || | ||||||    
T  1408145 atatgaagaattttttcaagctttcaggttttggttatgaatcacattttcccaaaattctgtatttttatatcttaaattccttcattgtcttttcttt 1408244  T
Q  239 ttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaactttcaatt--attgattattta 336  Q
    ||| |||||| ||||||||||||||||   |||||||||||||  ||||||||||||||| | ||||||||||||||| |  ||||  ||||||||||||    
T  1408245 ttattctcaatgttaacttcaaattatgtcatttcattttttatgaaagattattagctttatgaatacatattcaac-taaaattcaattgattattta 1408343  T
Q  337 caaatattgtccaagtatatttatc 361  Q
    |||| ||| ||| ||||||||||||    
T  1408344 caaacattatcctagtatatttatc 1408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 204 - 297
Target Start/End: Original strand, 36395702 - 36395795
Alignment:
Q  204 ttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||    
T  36395702 ttgtatatcttgaattccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 36395795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 171 - 362
Target Start/End: Original strand, 31074535 - 31074727
Alignment:
Q  171 tggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactat 270  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  31074535 tggttatgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatggtttcttctttataatctcgacgttaacttcaaattatactgt 31074634  T
Q  271 ttcattttttaaaaaagattattagcttcaagaatacatattcaactttcaatt--attgattatttacaaatattgtccaagtatatttatct 362  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| |  | ||  ||||||||||||||| |||||||| |||||||||||||    
T  31074635 ttcgttttttaagaaagattattagcttcaagaatacatattcaac-taaacttgaattgattatttacaactattgtcctagtatatttatct 31074727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 317
Target Start/End: Complemental strand, 9626100 - 9625924
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    ||||||||||| |||||||||||| || |||||||||||||||||| ||  |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  9626100 atatgaagaatcgtttcaggctttcaggtatggttatgaatcacattttttcaaattttgtatttgtatatcttgaattcctccatggtttcttcttttt 9626001  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 317  Q
    ||||| || ||||||||||||||||| | ||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  9626000 aatcttaatgttaacttcaaattatattgtttcattttttaagaaaaattattagctttaagaatacatattcaact 9625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 141 - 360
Target Start/End: Original strand, 28525276 - 28525493
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    |||||||||||||||||||| ||| || | | |||||||||||||| ||  |||||| |||||    |||| |||||||||||||| |||||||||||||    
T  28525276 atatgaagaattgtttcaggttttcaggtctagttatgaatcacatttttgcaaattctgtat----atatattgaattccttcatagtttcttcttttt 28525371  T
Q  241 aatctcaacgttaacttcaaattatactatttca-ttttttaaaaaagattattagcttcaagaatacatattcaactttcaatt---attgattattta 336  Q
    ||||| || ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||  | ||||   ||||||||||||    
T  28525372 aatcttaatgttaacttcaaattatactatttcatttttttaagaaagattattagtttcaagaatacatattcaac--taaatttcaattgattattta 28525469  T
Q  337 caaatattgtccaagtatatttat 360  Q
    |||||||||||| | |||||||||    
T  28525470 caaatattgtcctaatatatttat 28525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 28005840 - 28006052
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    ||||||||||||||||||||||||||  | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28005840 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctt--- 28005936  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 336  Q
                   ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    ||||   ||||||||||||    
T  28005937 ---------------ttcaaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttca---attgattattta 28006018  T
Q  337 caaatattgtccaagtatatttatctgggcatgt 370  Q
    ||||||||||||   ||||||||| || ||||||    
T  28006019 caaatattgtcctgatatatttatatgagcatgt 28006052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 28063143 - 28063355
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    ||||||||||||||||||||||||||  | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28063143 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctt--- 28063239  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 336  Q
                   ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    ||||   ||||||||||||    
T  28063240 ---------------ttcaaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttca---attgattattta 28063321  T
Q  337 caaatattgtccaagtatatttatctgggcatgt 370  Q
    ||||||||||||   ||||||||| || ||||||    
T  28063322 caaatattgtcctgatatatttatatgagcatgt 28063355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 36033158 - 36033277
Alignment:
Q  117 attttatatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttga 216  Q
    ||||||||||||||||||||||||    |||||||||||||| ||||| || | |||||||||||||||| ||| |||||||||||||||||||||||||    
T  36033158 attttatatcaattctagcaatat----gaagaattgtttcaagctttcaggtctggttatgaatcacattttctcaaattatgtatttgtatatcttga 36033253  T
Q  217 attccttcatggtttcttcttttt 240  Q
    ||||||||||||||||||||||||    
T  36033254 attccttcatggtttcttcttttt 36033277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 1579157 - 1579090
Alignment:
Q  39 cacaagacttccgacacaagaaaaa-aggcaccctttaactcacgaatcaccagagcagacacctaaa 105  Q
    ||||||||| || ||||||| |||| ||||| || | |||||||||| ||||||||||||||||||||    
T  1579157 cacaagactcccaacacaagtaaaagaggcatccctcaactcacgaaccaccagagcagacacctaaa 1579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 38387937 - 38387873
Alignment:
Q  39 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 102  Q
    ||||||||| |||||| |||  |||||||||||| | |||||||||| |||||||||| ||||||    
T  38387937 cacaagactcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacacct 38387873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 330642 - 330412
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    |||||||||||||||| ||||||||||   ||| || ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  330642 atatgaagaattgtttaaggcttttaggcctggctacgaatcacattttcccaaattatgtatttgtatatcttgaattcgtacatggtttcttcttttt 330543  T
Q  241 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 336  Q
    ||| |||| |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    ||||    |||||||||||    
T  330542 aatttcaatgttaacttcaaattatactatttcattttttaaggaatattattagcttcaagaatacatattcaactaaacttca---gttgattattta 330446  T
Q  337 caaatattgtccaagtatatttatctgggcatgt 370  Q
    |||||||||||| | |||||||| ||| ||||||    
T  330445 caaatattgtcctattatatttaactgagcatgt 330412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 123 - 307
Target Start/End: Complemental strand, 28864923 - 28864741
Alignment:
Q  123 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattcct 222  Q
    ||||||||||||||||||||  |||||||||||| ||||||| || | || ||||||||| ||| ||||||||||||||||||||||||||||||||| |    
T  28864923 tatcaattctagcaatatat--gaagaattgttttaggctttcaggtctgattatgaatcgcattttcccaaattatgtatttgtatatcttgaattcgt 28864826  T
Q  223 tcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatac 307  Q
    || |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  28864825 tcttggtttcttctttttaatttcaatgttaacttcaaatcatactatttcattttttaaaagagattattagcttcaagaatac 28864741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 123 - 317
Target Start/End: Complemental strand, 23773124 - 23772934
Alignment:
Q  123 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattcct 222  Q
    ||||||||||||||||||    |||||||| ||| ||| |||  | | |||||||||||||||| || | ||||| ||||||||||||||||||||| ||    
T  23773124 tatcaattctagcaatat----gaagaattattttaggttttgtggtctggttatgaatcacatttttctaaattctgtatttgtatatcttgaatttct 23773029  T
Q  223 tcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  23773028 tcatggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattatttgcttcaaaaatacatattcaact 23772934  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 28864683 - 28864634
Alignment:
Q  325 attgattatttacaaatattgtccaagtatatttatctgggcatgttcat 374  Q
    |||||||||||||||||||||||| | ||||||||| || ||||||||||    
T  28864683 attgattatttacaaatattgtcctattatatttatatgagcatgttcat 28864634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 42742397 - 42742464
Alignment:
Q  39 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacctaaa 105  Q
    ||||||||| ||||||||||  ||||||||||||   ||| |||||| ||||||||||||||||||||    
T  42742397 cacaagactcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacctaaa 42742464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 35847117 - 35847052
Alignment:
Q  39 cacaagacttccgacacaag--aaaaaaggcaccctttaactcacgaatcaccagagcagacacct 102  Q
    ||||| ||| ||||||||||  ||||||||||||| | ||||||| || |||||||||||||||||    
T  35847117 cacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacacct 35847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 123 - 360
Target Start/End: Complemental strand, 24745695 - 24745456
Alignment:
Q  123 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatat--cttgaat-- 218  Q
    ||||||||||||||||||    |||||||||| ||||||||| || | | |||||||||||||| || ||||||| |||||||||||||  |||||||      
T  24745695 tatcaattctagcaatat----gaagaattgtctcaggctttaaggtctagttatgaatcacatttttccaaattctgtatttgtatatatcttgaataa 24745600  T
Q  219 -tccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 317  Q
     ||||| |||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  24745599 ttcctttatggtttcttctttttaatctcaatgttaattttaaattgtactatttcattttttaagaaagactattagcttcaagaatatatattcaact 24745500  T
Q  318 ----ttcaattattgattatttacaaatattgtccaagtatatttat 360  Q
        ||||   |||||||||||||||||||||||  ||| |||||||    
T  24745499 aaacttca---attgattatttacaaatattgtcatagtctatttat 24745456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 360
Target Start/End: Complemental strand, 24753065 - 24752933
Alignment:
Q  229 tttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaatt 324  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||    |||||||    
T  24753065 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttctaagaaagattattagcttctagaatagatattcaactaaagttcaatt 24752966  T
Q  325 attgattatttacaaatattgtccaagtatatttat 360  Q
    |   |||||||||||||||||||| ||| |||||||    
T  24752965 a---attatttacaaatattgtcctagtctatttat 24752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 24753181 - 24753074
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 240  Q
    ||||||||||||||||   ||||| || | | |||||||||||||| || ||||||| ||||||||| ||||||||||||||| ||| ||||||||||||    
T  24753181 atatgaagaattgttttgagctttgaggtctagttatgaatcacatttttccaaattctgtatttgtttatcttgaattcctttatgatttcttcttttt 24753082  T
Q  241 aatctcaa 248  Q
    ||||||||    
T  24753081 aatctcaa 24753074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 26500337 - 26500401
Alignment:
Q  39 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 102  Q
    ||||||||||||||||||||  |||||||||||| | |||||||||| ||| |||||| ||||||    
T  26500337 cacaagacttccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacacct 26500401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 37707421 - 37707480
Alignment:
Q  43 agacttccgacaca-agaaaaaaggcaccctttaactcacgaatcaccagagcagacacc 101  Q
    ||||| |||||||| || |||||||||||| | |||||||||| ||||||||||||||||    
T  37707421 agactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 370
Target Start/End: Original strand, 14886860 - 14887079
Alignment:
Q  150 attgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaac 249  Q
    ||||||||| ||||| || | ||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||  ||||| ||||||||||||||     
T  14886860 attgtttcaagctttcaggtctggttgtgaatcacattttcccaaattctgtatttgtatatcttaaattccttcataatttctcctttttaatctcaat 14886959  T
Q  250 gttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattatttacaaatattg 345  Q
    ||||||||||||||| ||||||| ||||||||| ||| |||||||| |||||||||||  ||||||||    ||||   | |||||||||||||||||||    
T  14886960 gttaacttcaaattacactattttattttttaagaaatattattagtttcaagaatac--attcaactaagcttca---aatgattatttacaaatattg 14887054  T
Q  346 tccaagtatatttatctgggcatgt 370  Q
    ||  || ||||||||||| ||||||    
T  14887055 tcttagaatatttatctgagcatgt 14887079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 141 - 363
Target Start/End: Complemental strand, 26585949 - 26585719
Alignment:
Q  141 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtata------tcttgaattccttcatggtttctt 234  Q
    |||||||||||||||||||||||  || | || ||||||||||||| || |||||||||||||||| ||       ||||||||||| ||||||||||||    
T  26585949 atatgaagaattgtttcaggcttccaggtttgattatgaatcacatttttccaaattatgtatttgcattagcatttcttgaattccgtcatggtttctt 26585850  T
Q  235 ctttttaatctcaacgttaacttcaaattatactatttca-ttttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattga 329  Q
    |||||||||||||| || ||||| |||||||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||    ||||    ||||    
T  26585849 ctttttaatctcaatgtcaactttaaattatactattttatttttttaagaaagattattatcttaaagaatacatattcaactaaacttca---cttga 26585753  T
Q  330 ttatttacaaatattgtccaagtatatttatctg 363  Q
    ||||||| ||||||||||| ||||||||||||||    
T  26585752 ttatttataaatattgtcctagtatatttatctg 26585719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 18675624 - 18675750
Alignment:
Q  191 ccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagatt 290  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||| |||| |||||||    
T  18675624 ccaaattctgtatttgtataccttgaattccttcatggtttcttctttttaatctcaatattaacttcaggttatactatttcatttcttaagaaagatt 18675723  T
Q  291 attagcttcaagaatacatattcaact 317  Q
    |||||||| || |||||||||||||||    
T  18675724 attagctttaaaaatacatattcaact 18675750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 41958252 - 41958188
Alignment:
Q  39 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 102  Q
    ||||||||| | ||||||||  |||||||||||||| ||||||| || |||||||||||||||||    
T  41958252 cacaagactcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacacct 41958188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 45181613 - 45181550
Alignment:
Q  39 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacc 101  Q
    ||||||||| |||||| |||  |||||||||||| | |||||||||| ||||||||||||||||    
T  45181613 cacaagactcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 45181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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