View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_76 (Length: 384)
Name: NF1111_low_76
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_76 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 30 - 384
Target Start/End: Complemental strand, 1328816 - 1328462
Alignment:
| Q |
30 |
aaccaaacatgctacgctttccacgccgactttgcatcttgtactcaagcctctcatccaaatataacgaatatgtgcgcacaaatgcagagaagtccca |
129 |
Q |
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| T |
1328816 |
aaccaaacatgctacgctttccacgccgactttgcatcttgtactcaagcctctcatccaaatataacgaatatgtgcgcacaaatgcagagaagtccca |
1328717 |
T |
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| Q |
130 |
cgaaccagattgtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcacct |
229 |
Q |
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| T |
1328716 |
cgaaccagattgtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcacct |
1328617 |
T |
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| Q |
230 |
tctgctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaa |
329 |
Q |
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| T |
1328616 |
tcttctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaa |
1328517 |
T |
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| Q |
330 |
tgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttc |
384 |
Q |
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| T |
1328516 |
tgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttc |
1328462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 154 - 366
Target Start/End: Complemental strand, 1924015 - 1923803
Alignment:
| Q |
154 |
aaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaa |
253 |
Q |
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| T |
1924015 |
aaaatcagacatgttaagaagtcgagttccacgttgagttgagaagaatatttcttgttcataagcacgatcaccatcagccaacaacctttgaatcaaa |
1923916 |
T |
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| Q |
254 |
ataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgtta |
353 |
Q |
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| T |
1923915 |
acaagtgtttttaaagcaactgtccaactgcttgtcttgatcaaacgtttagagagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgtta |
1923816 |
T |
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| Q |
354 |
aactcagaatctc |
366 |
Q |
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| T |
1923815 |
agcttagaatctc |
1923803 |
T |
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