View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_78 (Length: 379)
Name: NF1111_low_78
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_78 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 366
Target Start/End: Complemental strand, 7679176 - 7678860
Alignment:
| Q |
46 |
acataaaaagttcattcacacgttaaaatcaacaggaaaaataaaaagaagggtttgagtgg------ataacatagttgcttaaatagcttctagatta |
139 |
Q |
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| T |
7679176 |
acataaaaagttcattcacacattaaaatcaacaggaaaaataaaaagaagggtttgagtggtcgtggataacatagttgcttaaatagcctctagatca |
7679077 |
T |
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| Q |
140 |
ctaaattaatgcatgcgctgattgcttgttagacaagttttttactctttagacatgattttgtacgatttgaatacaaactaattattattattattag |
239 |
Q |
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| T |
7679076 |
ctaaattaatgcatgcgctgattgcttgttagacaaattttttactctttagacatggttttgtacgatttaaatacaaactaattatt------attag |
7678983 |
T |
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| Q |
240 |
atgaaaaaattagcccacatcatcagctatgtgtgagacagacaatacaagaagggagattattattactgtaacaatgacaaacaatgcttccccagta |
339 |
Q |
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| T |
7678982 |
atgaaaaaattagcccgcatcatcagctatgtgtg----agacaatacaagaagggagattaatattactgtaacaatgaccaacaatgcttccccagta |
7678887 |
T |
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| Q |
340 |
tgagggaaaatgttcttgactagtttc |
366 |
Q |
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| T |
7678886 |
tgagggacaatgttcttgactagtttc |
7678860 |
T |
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