View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_8 (Length: 580)
Name: NF1111_low_8
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 98 - 570
Target Start/End: Complemental strand, 31527113 - 31526641
Alignment:
| Q |
98 |
aaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527113 |
aaaagcatgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatg |
31527014 |
T |
|
| Q |
198 |
aagaacttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31527013 |
aagaacttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatc |
31526914 |
T |
|
| Q |
298 |
tgtgtccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526913 |
tgtgtccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtat |
31526814 |
T |
|
| Q |
398 |
gcaatactcggagagattccaaatattcaaggaactgtaagttactaatacaacaaacttagatttttatcatgccaagttcatatgaataatatcttca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31526813 |
gcaatactcggagagattccaaatattcaaggaactgtaagttactaatacaacaaacttagatttttatcatgccaagttcatatgaataatatcttca |
31526714 |
T |
|
| Q |
498 |
aaattttcctcactccataatatattttactataatgcaaaacaggttaatgtaggtggcactcttgcctatg |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31526713 |
aaattttcctcactccataatatattttactataatgcgaaacaggttaatgtaggtggcactcttgcctatg |
31526641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 103 - 489
Target Start/End: Original strand, 15125241 - 15125624
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
||||||||| ||||||| || || ||||| |||||||| | | ||||||||| ||||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
15125241 |
catgggagaacctgttagaactatcccagaggctctatccaatatgattcaagctaaggtttcattcgatcgtcttaataacttttttcttgatgaagac |
15125340 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
||| ||||| |||| | |||||||| || |||| || |||||| ||||| | ||||||||| ||| ||||||| |||||||| ||||||| ||| |
|
|
| T |
15125341 |
cttaacaataatgaga---gtgaaaaaaacttaaaccagtgttcagttaatgctttacaaattcaagatggaaacttcatttgggatcatgaatctatgt |
15125437 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
| ||| | |||| ||||||||||||||| |||||| || |||||||||| |||||||||||||| |||||| |||||||||| |||||| |||||||||| |
|
|
| T |
15125438 |
ctccagccttaaaagatgttaatttagagataaaatggagacagaaaattgcagtttgtggaccagttggatctggaaaatcatctcttttgtatgcaat |
15125537 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagttactaatacaacaaacttagatttttatcatgccaagttcatatgaataa |
489 |
Q |
| |
|
||| |||||||| || || ||| ||||||||||||||||||||| |||| | |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
15125538 |
acttggagagatccctaagatttcaggaactgtaagttactaatagaacatatttaggtttttatcatgccaaattcatatgaataa |
15125624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 103 - 441
Target Start/End: Complemental strand, 5291106 - 5290771
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
||||||||| ||||||| |||||| || ||||||||||| ||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||| |
|
|
| T |
5291106 |
catgggagaacctgttagaatgatccctgaagctctatccattctgattcaagttaaggtttcgttcgatcgtcttactaattttttgcttgatgaagaa |
5291007 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
|| |||||||||||| |||||| | ||||| |||| ||| |||| ||||| ||||||| ||| ||||||| |||||||| ||||||| ||| |
|
|
| T |
5291006 |
ctaaacaatgatgata---gtgaaagaaacatacagcaactttcggtcaatgctgtggagattcaagatggaaacttcaattgggatcatgaatctatgt |
5290910 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
| ||||| |||| ||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||| |
|
|
| T |
5290909 |
ctccaaccttaaaggatgtaaatttagaaatcaaatggagacagaaaatagcagtttgtggaccagttggagctggaaaatcatcacttttgtatgcaat |
5290810 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagtta |
441 |
Q |
| |
|
||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
5290809 |
acttggagagattcccaagattcaaggaactgtaagtta |
5290771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 103 - 442
Target Start/End: Original strand, 5313202 - 5313538
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||||||||||||| || | ||| ||||||||||||| |
|
|
| T |
5313202 |
catgggagatcctgttcttatgatcccagaggctctatctataacgattcaagttaaggtttcctttgatcgtctcaacacatttatgcttgatgaagag |
5313301 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
|| |||||||||||| | || | | |||||||| |||||| |||| |||| ||| |||||||||||||||| |||||||| ||||||||| | |
|
|
| T |
5313302 |
ctgagtaatgatgataatgg---aagaaatataaagcaatgttcagtcaatgctgtggtaatccaagctggcaacttcatttgggatcatgaatctgtat |
5313398 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
||| |||||||| |||||| || ||||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5313399 |
cccaaactttaaaagatgtgaacttagagataaaatggggacagaaaatagcagtttgcggacctgttggagctggaaaatcatctcttctgtatgcaat |
5313498 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagttac |
442 |
Q |
| |
|
||| ||||||||||| || ||| |||||||||||||||| |
|
|
| T |
5313499 |
acttggagagattcctaagatttcaggaactgtaagttac |
5313538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 103 - 444
Target Start/End: Original strand, 5305989 - 5306327
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
||||| ||| ||||||| ||||| || || |||||||| ||| ||||||||||||||||||| || |||||||| |||||| || |||||||||||||| |
|
|
| T |
5305989 |
catggcagaacctgttaggatgatccctgaggctctatccattctgattcaagttaaggtttcgttcgatcgtctcaataaccttctgcttgatgaagaa |
5306088 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
|| |||||||||||| |||||| | || || |||| ||| ||||| |||||||||||| ||||||||||| |||||||| | ||||| ||| |
|
|
| T |
5306089 |
ctaaacaatgatgata---gtgaaagaaacctagagcaatgtaaggttaatgctatggaaattcaagatggcaacttcatttgggatcataaatctttgt |
5306185 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
| ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| || ||| |||||||||| |
|
|
| T |
5306186 |
ctccaactttaacagatgtaaatatagaaatcaaatggggacagaaaatagcagtttgtggaccagttggagccggaaaatcatcacttttgtatgcaat |
5306285 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagttacta |
444 |
Q |
| |
|
||| ||||||||||| || ||| ||||| ||||||||||||| |
|
|
| T |
5306286 |
acttggagagattcctaagatttaaggagctgtaagttacta |
5306327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 103 - 452
Target Start/End: Complemental strand, 5283611 - 5283265
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
||||||||| || ||||| |||| ||||| ||||| || ||| ||||||| || || ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283611 |
catgggagaaccatttaaattgatcccagaggctctttccattatgattcaggtgaaagtttcgtttgatcgtcttaataactttttgcttgatgaagag |
5283512 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
| ||||||||||| | |||| | | | ||||| | |||| ||||| |||||||||||| ||| ||||||| |||||||| |||||| |||| |
|
|
| T |
5283511 |
ataaacaatgatgatg---gcgaaagaagcttgaagcaattttcagttaatgctatggaaattcaagatggaaacttcatttgggatcatgaatcagtgt |
5283415 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
| |||||||||| |||||||||| ||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
5283414 |
ctccaactttaagagatgttaatatagaaatcaggcggggacagaaaattgcagtttgtggaccagttggagctggaaaatcatctcttttgtattcaat |
5283315 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagttactaatacaaca |
452 |
Q |
| |
|
||| |||||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
5283314 |
actaggagagattccaaagatttcaggaactgtaagttactaatagaaca |
5283265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 122 - 452
Target Start/End: Original strand, 11832543 - 11832870
Alignment:
| Q |
122 |
atgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaacttcacaatgatgataata |
221 |
Q |
| |
|
||||| ||||| ||||| || ||| ||||||||||||| |||| || ||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
11832543 |
atgatcccagaggctctttccattatgattcaagttaaagttttgttcgatcgtcttaataactttttgcttgatgaagaaatatacaatgatgatg--- |
11832639 |
T |
|
| Q |
222 |
gtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgtccccaactttaacagatgt |
321 |
Q |
| |
|
| |||| | || ||||||| |||||| |||| |||||||||||| ||| |||||| ||| |||| | |||||||||| |||||||||| |||||| |
|
|
| T |
11832640 |
gcgaaagaaacttaaagcaatgttcagttaattctatggaaattcaagatggagacttcatttgtgatcataaatctgtgtctccaactttaagagatgt |
11832739 |
T |
|
| Q |
322 |
taatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaatactcggagagattccaaat |
421 |
Q |
| |
|
|||| ||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
11832740 |
taatatagaaatcaggtggggacagaaaattgcagtttgtggaccagttggagctggaaaatcatctcttttgtatgcaatactaggagagattccaaag |
11832839 |
T |
|
| Q |
422 |
attcaaggaactgtaagttactaatacaaca |
452 |
Q |
| |
|
||| |||||||||||||| |||||| |||| |
|
|
| T |
11832840 |
atttcaggaactgtaagtttctaatagaaca |
11832870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 103 - 485
Target Start/End: Complemental strand, 14950425 - 14950046
Alignment:
| Q |
103 |
catgggagatcctgttaaaatgattccagaagctctatcgattttgattcaagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaa |
202 |
Q |
| |
|
||||||||| ||| ||| |||| | || || |||||||| | | ||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
14950425 |
catgggagagcctattataatgttccctgaggctctatccactatgattcaagttaaggtttcgtttgatcgtcttaaaagctttttgcttgctgaagaa |
14950326 |
T |
|
| Q |
203 |
cttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaatgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgt |
302 |
Q |
| |
|
|| |||||||||||| || ||| | || |||||| |||| ||||| || || ||||||| ||| ||||||| |||||||| ||||||||| | |
|
|
| T |
14950325 |
ctaaacaatgatgatagta---aaagaaacttaaagccatgtttggttaatgctgtcgacattcaagatggtaacttcatttgggatcatgaatctgtat |
14950229 |
T |
|
| Q |
303 |
ccccaactttaacagatgttaatttagaaataaaacggggacagaaaatagcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaat |
402 |
Q |
| |
|
| |||||||||||| |||| |||||||| || ||| || |||| ||||| |||||||| ||| | || ||| | |||||||| |||||| |||||||||| |
|
|
| T |
14950228 |
ctccaactttaacaaatgtgaatttagatatcaaatggagacacaaaattgcagtttgcggagcagtgggatccggaaaatcatctcttttgtatgcaat |
14950129 |
T |
|
| Q |
403 |
actcggagagattccaaatattcaaggaactgtaagttactaatacaacaaacttagatttttatcatgccaagttcatatga |
485 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||| ||||||| ||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
14950128 |
actcggagagatttccaagattcaaggaactgtaagtaactaatagtacaaatttagatctttatcatgcaaagttcatatga |
14950046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 519 - 570
Target Start/End: Original strand, 5306414 - 5306465
Alignment:
| Q |
519 |
atattttactataatgcaaaacaggttaatgtaggtggcactcttgcctatg |
570 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5306414 |
atattttactataatggaaaacaggttaatgtaggtggcacacttgcctatg |
5306465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 519 - 570
Target Start/End: Complemental strand, 5282982 - 5282931
Alignment:
| Q |
519 |
atattttactataatgcaaaacaggttaatgtaggtggcactcttgcctatg |
570 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5282982 |
atattttactataatggagaacaggttaatgtaggtggaactcttgcctatg |
5282931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 519 - 570
Target Start/End: Complemental strand, 14949732 - 14949681
Alignment:
| Q |
519 |
atattttactataatgcaaaacaggttaatgtaggtggcactcttgcctatg |
570 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
14949732 |
atattttgctataatggaaaacaggttaatgtaggtggcacactagcctatg |
14949681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 486
Target Start/End: Original strand, 11833027 - 11833072
Alignment:
| Q |
441 |
actaatacaacaaacttagatttttatcatgccaagttcatatgaa |
486 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
11833027 |
actaataaaacagatttagatttttatcatgccaaattcatatgaa |
11833072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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