View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_80 (Length: 378)

Name: NF1111_low_80
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_80
NF1111_low_80
[»] chr5 (3 HSPs)
chr5 (202-280)||(43194323-43194401)
chr5 (1-75)||(43194131-43194205)
chr5 (202-274)||(43194495-43194567)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 43194323 - 43194401
Alignment:
Q  202 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194323 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac 43194401  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43194131 - 43194205
Alignment:
Q  1 tagatataatcattggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194131 tagatataatcattggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 43194205  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 202 - 274
Target Start/End: Original strand, 43194495 - 43194567
Alignment:
Q  202 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca 274  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||   ||| |||| | ||||||||||||||||    
T  43194495 aagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca 43194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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