View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_82 (Length: 377)
Name: NF1111_low_82
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 43194155 - 43193951
Alignment:
| Q |
1 |
atgacctaaccaatgattatatctaaactgaagtttgttaaatatttgatgttattaaaattannnnnnnnnnnnnaattgatatttgatttggttcttg |
100 |
Q |
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| T |
43194155 |
atgacctaaccaatgattatatctaaactgaagtctgttaaatatttgatgttattaaaattatttttatttttttaattgagatttgatttggttcttg |
43194056 |
T |
|
| Q |
101 |
gtgttgatgatgctgtctaataatttgagattgaatcgttcagatgagttaaaaaagtttgttttggctagattatctgaaagttttgatctcaattgaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194055 |
gtgttaatgatgctgtctaataatttgagattgaatcgttcagatgagttaaaaaagtttgttttggctagattatctgaaagttttgatctcaattgaa |
43193956 |
T |
|
| Q |
201 |
gtggg |
205 |
Q |
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||||| |
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| T |
43193955 |
gtggg |
43193951 |
T |
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