View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_low_86 (Length: 368)

Name: NF1111_low_86
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_low_86
NF1111_low_86
[»] chr4 (19 HSPs)
chr4 (5-198)||(7341863-7342059)
chr4 (239-353)||(7342058-7342172)
chr4 (292-353)||(969433-969494)
chr4 (268-348)||(485978-486058)
chr4 (259-353)||(19304816-19304910)
chr4 (271-353)||(24443938-24444020)
chr4 (259-321)||(54414837-54414899)
chr4 (268-321)||(8703742-8703795)
chr4 (259-351)||(23676604-23676697)
chr4 (259-316)||(33640996-33641053)
chr4 (295-352)||(51555956-51556013)
chr4 (258-350)||(30024587-30024679)
chr4 (295-353)||(36734817-36734875)
chr4 (259-319)||(4243228-4243289)
chr4 (259-352)||(8422926-8423019)
chr4 (279-320)||(24193493-24193534)
chr4 (259-300)||(36048415-36048456)
chr4 (253-321)||(25548649-25548717)
chr4 (292-352)||(44019444-44019504)
[»] scaffold0590 (1 HSPs)
scaffold0590 (259-353)||(1162-1256)
[»] scaffold0275 (1 HSPs)
scaffold0275 (259-353)||(2719-2813)
[»] chr5 (13 HSPs)
chr5 (259-348)||(26516186-26516275)
chr5 (259-348)||(41052778-41052867)
chr5 (271-355)||(20982221-20982305)
chr5 (259-352)||(29115302-29115395)
chr5 (258-353)||(6738495-6738590)
chr5 (269-346)||(16945076-16945155)
chr5 (269-353)||(32172551-32172635)
chr5 (269-347)||(29588778-29588856)
chr5 (279-353)||(37063162-37063236)
chr5 (259-353)||(39257474-39257568)
chr5 (260-321)||(2569822-2569883)
chr5 (304-353)||(7096215-7096264)
chr5 (268-320)||(33961600-33961652)
[»] chr8 (19 HSPs)
chr8 (259-353)||(14482090-14482184)
chr8 (268-318)||(27754556-27754606)
chr8 (268-353)||(20672669-20672754)
chr8 (261-321)||(27320206-27320266)
chr8 (259-350)||(4558686-4558777)
chr8 (259-350)||(35453714-35453805)
chr8 (271-353)||(35869737-35869819)
chr8 (259-321)||(43208253-43208315)
chr8 (260-299)||(4271836-4271875)
chr8 (259-306)||(6950224-6950271)
chr8 (259-353)||(10079151-10079245)
chr8 (295-353)||(35534949-35535007)
chr8 (268-321)||(12972753-12972806)
chr8 (272-353)||(29699155-29699236)
chr8 (259-300)||(34290800-34290841)
chr8 (288-353)||(40356788-40356853)
chr8 (268-320)||(12496575-12496627)
chr8 (270-350)||(40280296-40280376)
chr8 (259-319)||(41336767-41336827)
[»] chr6 (9 HSPs)
chr6 (279-353)||(2514610-2514684)
chr6 (259-353)||(9027465-9027559)
chr6 (271-321)||(3217310-3217360)
chr6 (268-347)||(33068655-33068734)
chr6 (271-317)||(18264231-18264277)
chr6 (259-321)||(33828534-33828596)
chr6 (268-344)||(31461575-31461651)
chr6 (270-321)||(32386219-32386270)
chr6 (278-349)||(27727165-27727237)
[»] chr2 (12 HSPs)
chr2 (257-353)||(28803594-28803690)
chr2 (272-353)||(36852366-36852447)
chr2 (287-353)||(33197327-33197393)
chr2 (302-353)||(25609727-25609778)
chr2 (278-320)||(44589941-44589984)
chr2 (279-353)||(4550685-4550759)
chr2 (263-353)||(10143064-10143154)
chr2 (259-353)||(31461326-31461420)
chr2 (267-321)||(43808472-43808526)
chr2 (268-321)||(13189507-13189560)
chr2 (272-321)||(41949966-41950015)
chr2 (272-320)||(37844847-37844895)
[»] chr7 (10 HSPs)
chr7 (270-354)||(30133950-30134032)
chr7 (268-353)||(49060437-49060522)
chr7 (287-345)||(3610836-3610894)
chr7 (271-353)||(9527178-9527260)
chr7 (259-353)||(31341082-31341176)
chr7 (259-344)||(22388001-22388086)
chr7 (268-353)||(47003984-47004069)
chr7 (259-319)||(25660003-25660063)
chr7 (268-320)||(28844383-28844435)
chr7 (259-319)||(39630509-39630569)
[»] chr1 (5 HSPs)
chr1 (259-351)||(17420091-17420183)
chr1 (259-319)||(24263261-24263321)
chr1 (295-360)||(42550165-42550230)
chr1 (278-350)||(4549772-4549845)
chr1 (268-309)||(48133071-48133112)
[»] chr3 (10 HSPs)
chr3 (279-353)||(41028939-41029013)
chr3 (268-317)||(21574389-21574438)
chr3 (259-314)||(20504100-20504155)
chr3 (259-321)||(28289241-28289303)
chr3 (259-353)||(38462169-38462263)
chr3 (268-321)||(29094278-29094331)
chr3 (312-353)||(32555069-32555110)
chr3 (288-353)||(41159026-41159091)
chr3 (265-321)||(28842977-28843033)
chr3 (262-349)||(39971210-39971297)
[»] scaffold0349 (1 HSPs)
scaffold0349 (278-349)||(5744-5816)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 7341863 - 7342059
Alignment:
Q  5 tctccaagaatatcatcattccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttctttctcacttcatatag--aat 102  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  7341863 tctccaaccatatcatcattccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttctttctcacttcatatagataat 7341962  T
Q  103 caaggtgcaaatgcaatgcttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgatta-ttcatggttgattaata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7341963 caaggtgcaaatgcaatgcttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgattatttcatggttgattaata 7342059  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 7342058 - 7342172
Alignment:
Q  239 tagtcatgagcttcgctttcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaag 338  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  7342058 tagtcatgagcttcgctttgataaacattttaattaagtgcttatagtataaatgcttatcagataagtgcttatgtataagcacttactacagtaaaag 7342157  T
Q  339 ataaaataaagtcaa 353  Q
    |||||||||||||||    
T  7342158 ataaaataaagtcaa 7342172  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 969494 - 969433
Alignment:
Q  292 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||| |||||||||||| |||||||| || ||| |||||||| ||||||||||||||    
T  969494 cgcttatcatataagtgcttatctataagcaatttctataataaaaggtaaaataaagtcaa 969433  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 485978 - 486058
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaa 348  Q
    ||||||||| |||||||| |||| ||||||||| | ||||||||||||||| ||  || ||| || |||||||||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaataaa 486058  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 19304816 - 19304910
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||||||| |||||||  ||||||||||| ||| |||||||||||||| |||||  || ||  |||||||||||  ||||||||||    
T  19304816 ataaacaacttaattaaatgcttatgctataaacgcttctcatataagtgcttatgtttaagctattgctttaataaaagatatgataaagtcaa 19304910  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 24443938 - 24444020
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||| |||||||| |||| | ||||||| |||||| |||||||||||||  || |||||| |||| |||||||||| ||||    
T  24443938 attaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaa 24444020  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 54414837 - 54414899
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||  ||||||||||| ||||  ||||| ||||||||| ||||||||||||||||||||    
T  54414837 ataaacaacttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagc 54414899  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 8703795 - 8703742
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||||||||||||  |||||  |||||||||| |||||||||||||||||    
T  8703795 ttaattaagtgcttataacataaatacttatcagatgagtgcttatgtataagc 8703742  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 23676604 - 23676697
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaat-aaaagataaaataaagtc 351  Q
    ||||||| ||||| |||||||||||||  |||| |||| ||| |||||||||| ||||||| |  ||  |||||| ||||||||||||||||||    
T  23676604 ataaacaatttaactaagtgcttatagcttaaatgcttgtcatataagtgcttttgtataatctatttatacaataaaaagataaaataaagtc 23676697  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 33640996 - 33641053
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgta 316  Q
    |||||||  |||||||||||||||||| |||| ||||||||| |||||||||| ||||    
T  33640996 ataaacagcttaattaagtgcttatagaataatcgcttatcatataagtgcttttgta 33641053  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 51556013 - 51555956
Alignment:
Q  295 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 352  Q
    |||||| ||||||||||||||||||||  ||| || || |||||||||||||||||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagtca 51555956  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 30024587 - 30024679
Alignment:
Q  258 cataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagt 350  Q
    ||||||||  ||||||||||| |||||||| || || |||||| |||||| |||||| |||||   || ||| || |||||||||||||||||    
T  30024587 cataaacaacttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagt 30024679  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 36734817 - 36734875
Alignment:
Q  295 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||| |||||||||||||||||| | ||| ||| || ||||| ||||||||||||||    
T  36734817 ttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaa 36734875  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 4243228 - 4243289
Alignment:
Q  259 ataaacattttaattaagtgctta-tagtataaacgcttatcagataagtgcttatgtataa 319  Q
    |||||||  ||||||||||||||| ||| |||| ||||||||| |||||||||| |||||||    
T  4243228 ataaacagcttaattaagtgcttattagcataagcgcttatcatataagtgcttgtgtataa 4243289  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 8423019 - 8422926
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 352  Q
    |||||||  ||||||||||| |||||| |||| |   ||||| ||| ||||||||||||||||  ||  || || |||||||||||||||||||    
T  8423019 ataaacaacttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtca 8422926  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 24193493 - 24193534
Alignment:
Q  279 cttatagtataaacgcttatcagataagtgcttatgtataag 320  Q
    ||||||| |||||||||||||| |||||| ||||||||||||    
T  24193493 cttatagcataaacgcttatcatataagtacttatgtataag 24193534  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 36048415 - 36048456
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatca 300  Q
    |||| |||||||||||||||||||||| ||||| ||||||||    
T  36048415 ataagcattttaattaagtgcttatagcataaatgcttatca 36048456  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 25548717 - 25548649
Alignment:
Q  253 gctttcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||| ||||||| |||||||||| | |||||| | |||| |||| || ||||||||||||| ||||||    
T  25548717 gctttgataaacaatttaattaagggattatagcagaaacacttaccacataagtgcttatgcataagc 25548649  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 44019444 - 44019504
Alignment:
Q  292 cgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 352  Q
    |||||||||||||||||  |||||||| ||  || ||| || |||||||||||||||||||    
T  44019444 cgcttatcagataagtgtgtatgtataggctatttctataagaaaagataaaataaagtca 44019504  T

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Target: scaffold0590 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 1256 - 1162
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||||||||| ||||||| |||||||  ||||| ||||||||||||||||||||  || ||| || ||||||||||||||||||||    
T  1256 ataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 1162  T

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Target: scaffold0275 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 2719 - 2813
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||||||||| ||||||| |||||||  ||||| ||||||||||||||||||||  || ||| || ||||||||||||||||||||    
T  2719 ataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 2813  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 26516186 - 26516275
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaa 348  Q
    |||||||  ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||  || ||| || |||||||||||||||    
T  26516186 ataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 41052778 - 41052867
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaa 348  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| | ||||||||||||||||  || | | |||||||||| |||||||    
T  41052778 ataaacaatttaattaagtgcttgtagcataaacgcttatcagacaggtgcttatgtataagctttttcaataataaaagatcaaataaa 41052867  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 271 - 355
Target Start/End: Complemental strand, 20982305 - 20982221
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaacc 355  Q
    ||||||||||||||| ||||  |||||||| ||||||||||||||||||||  || ||| || ||| ||||||||||||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaacc 20982221  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 29115395 - 29115302
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtca 352  Q
    ||||||| |||||||| | |||||||| ||||||  |||||| | ||||||||||||||||||  || |||||| ||||| |||||||||||||    
T  29115395 ataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 6738590 - 6738495
Alignment:
Q  258 cataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||||||||| | |||||| |||||| ||||||| |||||| |||||||||||||  || | | ||||||||| |||||||||||||    
T  6738590 cataaaccgtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctatttcaataataaaagacaaaataaagtcaa 6738495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 16945155 - 16945076
Alignment:
Q  269 taattaagtgcttatagtataaacgcttatcag--ataagtgcttatgtataagcacttactacaataaaagataaaata 346  Q
    |||||||||| |||||| ||||| ||||||||   ||||||||||||||||||||  || |||||| |||||||||||||    
T  16945155 taattaagtgtttatagcataaaagcttatcatgtataagtgcttatgtataagctatttctacaagaaaagataaaata 16945076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 353
Target Start/End: Original strand, 32172551 - 32172635
Alignment:
Q  269 taattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||| ||||| || |||| ||||||||| | ||| |||||||||||| |  || |||||| |||||||||||| |||||||    
T  32172551 taattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagtcaa 32172635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 347
Target Start/End: Original strand, 29588778 - 29588856
Alignment:
Q  269 taattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataa 347  Q
    |||||||| |||||||| |||||| ||| | | ||||||||||||||||||||  || ||| || |||| |||||||||    
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaataa 29588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 37063236 - 37063162
Alignment:
Q  279 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| ||||| |||| ||| |||| ||||||||||||| |  || ||| || ||||||||||||||||||||    
T  37063236 cttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaa 37063162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 39257568 - 39257474
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  ||||||||| |||||||| ||||||  ||||||  |||||||||||||||| ||  |  ||| || ||||| ||||||||||||||    
T  39257568 ataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagtcaa 39257474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 2569883 - 2569822
Alignment:
Q  260 taaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||| |||||||||| |||||||   |||||  |||||| ||||||||||||||||||||    
T  2569883 taaacaatttaattaagcgcttataccgtaaacatttatcatataagtgcttatgtataagc 2569822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 7096264 - 7096215
Alignment:
Q  304 aagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||||||||||||  || ||| || ||||||||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 7096215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 33961600 - 33961652
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 320  Q
    ||||||||||| ||||||||||| | ||||||| ||||||| || ||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataag 33961652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 14482090 - 14482184
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| ||||||||||| ||||||| || |  |||||||| |||||||||||||||||| |  || ||| || ||||||||||||||||||||    
T  14482090 ataaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaa 14482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 27754606 - 27754556
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtata 318  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  27754606 ttaattaagtgtttatagtataaacgcttatcatttaagtgcttatgtata 27754556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 20672669 - 20672754
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||| | |||||||| ||| |||||||| |||||||||||||| || || |||  || || ||||||||||||||||||||    
T  20672669 ttaattaagagtttatagtagaaaagcttatcatataagtgcttatgtgtatgccctttatataacaaaagataaaataaagtcaa 20672754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 27320206 - 27320266
Alignment:
Q  261 aaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||| |||||||||| |||||||| |||||| ||||||| ||||||||||| ||||||||    
T  27320206 aaacaatttaattaagcgcttatagcataaacacttatcacataagtgcttacgtataagc 27320266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 4558686 - 4558777
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagt 350  Q
    |||||||  ||||||| | |||||||| ||||||| |||| |  |||||| ||||||||||||  || ||| ||||||||||||||||||||    
T  4558686 ataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagt 4558777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 35453805 - 35453714
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagt 350  Q
    |||||||  ||||||||||| |||||| |||| ||||| ||| |||||| ||||| ||||| |  || |||||| |||||||||||||||||    
T  35453805 ataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagt 35453714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 35869737 - 35869819
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||| |||||||| |||| | ||||||| |||||| |||||||||||||  || |||||| |||| |||||||||| ||||    
T  35869737 attaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattcaa 35869819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 43208315 - 43208253
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||  |||||||||||||||||||||||||| | |||| ||||||  ||||||||||||    
T  43208315 ataaacaacttaattaagtgcttatagtataaacgttcatcatataagtatttatgtataagc 43208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 4271836 - 4271875
Alignment:
Q  260 taaacattttaattaagtgcttatagtataaacgcttatc 299  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  4271836 taaacagtttaattaagtgcttatagtataaatgcttatc 4271875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 6950224 - 6950271
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataag 306  Q
    |||||||  |||||||||||||||||| |||||||||||||| |||||    
T  6950224 ataaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 353
Target Start/End: Complemental strand, 10079245 - 10079151
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| |||||| ||||||||||| |||||| |||| ||| |||  ||||||| |||| ||  || |||  |||||||||||||| |||||||    
T  10079245 ataaacagtttaatcaagtgcttatattataaatgcttttcatatacatgcttatttataggctatttctatgataaaagataaaatgaagtcaa 10079151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 35535007 - 35534949
Alignment:
Q  295 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||| |||||||||||| |||||||  || ||| |||||||| ||||||||||||||    
T  35535007 ttatcatataagtgcttatatataagctatttctataataaaagttaaaataaagtcaa 35534949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 12972753 - 12972806
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||||||| |||||||| |||| |  |||||| ||||||||||||||||||||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagc 12972806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 29699155 - 29699236
Alignment:
Q  272 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||||||||| |||||   |||||| |||| |||||||||| |||   || ||| || ||||||||||||||||||||    
T  29699155 ttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaa 29699236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 34290800 - 34290841
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatca 300  Q
    |||||||||||||||||||||||||| | |||| ||||||||    
T  34290800 ataaacattttaattaagtgcttataatgtaaatgcttatca 34290841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 40356788 - 40356853
Alignment:
Q  288 taaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||| ||| ||| |||||||||||| |||||||  ||  || |||||||||||||||||||||||    
T  40356788 taaacacttgtcatataagtgcttatctataagctatttatataataaaagataaaataaagtcaa 40356853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 12496575 - 12496627
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 320  Q
    ||||||||||| |||||| || ||||||||||| |||||| | ||||||||||    
T  12496575 ttaattaagtgtttatagcattaacgcttatcatataagtacgtatgtataag 12496627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 40280376 - 40280296
Alignment:
Q  270 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagt 350  Q
    ||||||| |||||||| |  | ||||||||| |||||||| ||| ||||||   || |||||| |||||||||||||||||    
T  40280376 aattaagcgcttatagcaatagcgcttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagt 40280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 41336827 - 41336767
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 319  Q
    |||||||  |||||||| ||||||||| |||| || |||||| |||| |||||||||||||    
T  41336827 ataaacaacttaattaattgcttatagcataagcgtttatcaaataaatgcttatgtataa 41336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 2514610 - 2514684
Alignment:
Q  279 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| ||||| ||||||||  |||||||||||||||||||  || ||| |||||||||||||||||||||||    
T  2514610 cttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagtcaa 2514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 9027465 - 9027559
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| ||||| |||| |||||||| || ||| ||||| | |||||||||||| |||||||  || |||||||| ||||||||||||||||||    
T  9027465 ataaacagtttaagtaagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtcaa 9027559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Complemental strand, 3217360 - 3217310
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  3217360 attaagtgcttatagtataagcgattatcatataagtgcttatgtataagc 3217310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 347
Target Start/End: Complemental strand, 33068734 - 33068655
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataa 347  Q
    ||||||||||| |||||| |||| ||||||||| |||| ||||||||||||||   || ||| || ||||||||||||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataa 33068655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 18264231 - 18264277
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtat 317  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  18264231 attaagtgcgtatagtataaacgtttatcatataagtgcttatgtat 18264277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 33828534 - 33828596
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||  ||||||| ||||| |||||    
T  33828534 ataaacagtttaactaagtgcttatagcataaacgcttatcatttaagtgcatatgtgtaagc 33828596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 31461575 - 31461651
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaa 344  Q
    ||||||||||||||||| ||||| | |||||   ||||||||||||||||||||  || ||| || |||||||||||    
T  31461575 ttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 32386270 - 32386219
Alignment:
Q  270 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||  ||||||||||||| | |||||| ||||||||||||||||||||    
T  32386270 aattaagcacttatagtataaaagtttatcatataagtgcttatgtataagc 32386219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 27727237 - 27727165
Alignment:
Q  278 gcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaag 349  Q
    ||||||||||||||| ||||||| |||||||||||| || |||  | || ||| ||| |||||||||||||||    
T  27727237 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 27727165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 28803690 - 28803594
Alignment:
Q  257 tcataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||| |||||||||||| |||| | ||||| |||||||| |||||||||||| ||||||   || | | || ||||||||||||||||||||    
T  28803690 tcataaacagtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaa 28803594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 36852366 - 36852447
Alignment:
Q  272 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| || ||| ||||||||||| |||||||||||||||||||||||  || ||  | || ||||||||||||||||||    
T  36852366 ttaagtgtttgtagcataaacgcttaccagataagtgcttatgtataagctatttctctattagaagataaaataaagtcaa 36852447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 33197393 - 33197327
Alignment:
Q  287 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||||||||| |||||||||||| |||||||  || ||| || |||||||| |||||||||||    
T  33197393 ataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 25609727 - 25609778
Alignment:
Q  302 ataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||||||||||||||  || ||| || ||||||||||||||||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaa 25609778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 44589941 - 44589984
Alignment:
Q  278 gcttatagtataaacgcttatca-gataagtgcttatgtataag 320  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  44589941 gcttatagtataagcgcttatcatgataagtgcttatgtataag 44589984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 4550685 - 4550759
Alignment:
Q  279 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||| |||| | ||||||| |||||||||||||||||||   || | | ||||||||||||||||| |||||    
T  4550685 cttatagcataatctcttatcacataagtgcttatgtataagttgtttccataataaaagataaaataacgtcaa 4550759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 10143064 - 10143154
Alignment:
Q  263 acattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||| ||||||||||||||| || | |||  ||||||  |||||||||||||||||||   || ||| || |||||||||||| |||||||    
T  10143064 acatcttaattaagtgcttacagcacaaaaacttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaa 10143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 31461326 - 31461420
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||||||||  ||| ||| |||||||  ||||| ||||||| |||| |||||||  || ||| || ||||||||||||||||||||    
T  31461326 ataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaa 31461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 43808472 - 43808526
Alignment:
Q  267 tttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||||||| |||||| |||| ||| ||||| ||||||| ||||||||||||    
T  43808472 tttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagc 43808526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 13189560 - 13189507
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||||||||| ||||||||| ||| |||||||  ||||||||| |||||||||    
T  13189560 ttaattaagtggttatagtattaacacttatcatgtaagtgcttttgtataagc 13189507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 41949966 - 41950015
Alignment:
Q  272 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||| ||||    
T  41949966 ttaagtgcttataggataaatgtttatcatataagtgcttatgtagaagc 41950015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 37844895 - 37844847
Alignment:
Q  272 ttaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 320  Q
    |||||||||||||| ||||| |||||||| ||||||| |||| ||||||    
T  37844895 ttaagtgcttatagcataaaagcttatcatataagtgtttatctataag 37844847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 30133950 - 30134032
Alignment:
Q  270 aattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaac 354  Q
    |||||| ||||||||| |||| |||||||||  |||||| ||||||||||||  ||  ||||| |||||||||||||||||||||    
T  30133950 aattaaatgcttatagcataagcgcttatca--taagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaac 30134032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 49060437 - 49060522
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||||  ||||||||||||  |||||||| ||||||  ||||||||||||  || ||| || |||| |||||||||||||||    
T  49060437 ttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaa 49060522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 3610894 - 3610836
Alignment:
Q  287 ataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaat 345  Q
    |||||| ||| ||| ||||||||||||||||||||  || |||||| ||||||||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaat 3610836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 9527260 - 9527178
Alignment:
Q  271 attaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||| |||||||||||| ||||||| | |||||||||| |||| ||  |  ||| || |||||||| |||||||||||    
T  9527260 attaagtgcctatagtataaacacttatcatacaagtgcttatatatacgctatatctataacaaaagatataataaagtcaa 9527178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 31341082 - 31341176
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  ||||| ||| |||||| | |||| |||||||||  ||| |||||||||||||||  ||  || || ||||||||||||||||||||    
T  31341082 ataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtcaa 31341176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 22388086 - 22388001
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaa 344  Q
    |||||||  ||||||||| |||||||  |||||| |||||||  |||||||||||| ||||||  || ||| || |||||||||||    
T  22388086 ataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 47003984 - 47004069
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||||||||||||| | ||| | |||||| ||||||| |||| | |||||  || ||| || || |||||||||||||||||    
T  47003984 ttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaa 47004069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 25660063 - 25660003
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 319  Q
    ||||||| |||||||||    |||||||||||||  |||||| ||||||||||||||||||    
T  25660063 ataaacagtttaattaaacatttatagtataaacaattatcacataagtgcttatgtataa 25660003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 28844383 - 28844435
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag 320  Q
    ||||||||||| |||||| |||| |||||||   |||||||||||||||||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataag 28844435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 39630509 - 39630569
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 319  Q
    |||||||  |||||||||||||||||||  || | |||||||  |||||||||||||||||    
T  39630509 ataaacaacttaattaagtgcttatagtgcaagcccttatcacttaagtgcttatgtataa 39630569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 17420091 - 17420183
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtc 351  Q
    |||||||  ||||||||||| ||||||||||| |||||| || |||||| ||||||||||| |  ||  || || ||||||||||||||||||    
T  17420091 ataaacagcttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaactatttttataagaaaagataaaataaagtc 17420183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 24263321 - 24263261
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataa 319  Q
    ||||||| ||||||||||||||||||| ||||||| ||| || ||||||| ||||||||||    
T  24263321 ataaacagtttaattaagtgcttatagcataaacgtttagcatataagtgtttatgtataa 24263261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 42550165 - 42550230
Alignment:
Q  295 ttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaaccttttt 360  Q
    |||||| | ||||||||||||||||||   | |||| |||||||||||||||||||||| ||||||    
T  42550165 ttatcatacaagtgcttatgtataagctagttctacgataaaagataaaataaagtcaaacttttt 42550230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 4549772 - 4549845
Alignment:
Q  278 gcttatagtataaacgcttatca-gataagtgcttatgtataagcacttactacaataaaagataaaataaagt 350  Q
    |||||||| ||||||||||| || ||||| |||||||||| ||||  || ||| || |||||||||||||||||    
T  4549772 gcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaaagataaaataaagt 4549845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 48133112 - 48133071
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgc 309  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  48133112 ttaattaagcgcttatagcataaacgcttatcatataagtgc 48133071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 353
Target Start/End: Complemental strand, 41029013 - 41028939
Alignment:
Q  279 cttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  |||| |||||||| ||||||||||||||||||||  || ||| || |||||| |||||||||||||    
T  41029013 cttatagcttaaatgcttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaa 41028939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 21574389 - 21574438
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtat 317  Q
    ||||||||||||||||||||||||||||| |||  |||||| ||||||||    
T  21574389 ttaattaagtgcttatagtataaacgcttctcatgtaagtgtttatgtat 21574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 20504100 - 20504155
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatg 314  Q
    |||||||  ||||||||| |||||||||||||| ||||||||  ||||||||||||    
T  20504100 ataaacagcttaattaagcgcttatagtataaaggcttatcatttaagtgcttatg 20504155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 28289303 - 28289241
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||||| |||||||||||| || ||| |||||| |||||||  |||||||| ||||||||||    
T  28289303 ataaacagtttaattaagtgtttttagcataaacacttatcatctaagtgctcatgtataagc 28289241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 353
Target Start/End: Original strand, 38462169 - 38462263
Alignment:
Q  259 ataaacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    |||||||  ||||||||| || || || |||||| ||||||| ||||||| |||| |||||||  || ||| |  ||||||||||||||||||||    
T  38462169 ataaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaa 38462263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 29094278 - 29094331
Alignment:
Q  268 ttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    ||||||||  |||||||| |||||| ||||||| ||||||| ||||||||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgtataagc 29094331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 32555110 - 32555069
Alignment:
Q  312 atgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||    
T  32555110 atgtataagcaattattacaacaaaagataaaataaagtcaa 32555069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Original strand, 41159026 - 41159091
Alignment:
Q  288 taaacgcttatcagataagtgcttatgtataagcacttactacaataaaagataaaataaagtcaa 353  Q
    ||||||||||||  |||||||||||||||||||   || ||| ||  |||||||||||||||||||    
T  41159026 taaacgcttatcgtataagtgcttatgtataagttattcctataactaaagataaaataaagtcaa 41159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 28843033 - 28842977
Alignment:
Q  265 attttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataagc 321  Q
    |||| |||||||  ||||||  |||| ||||||||| ||||||||||||||||||||    
T  28843033 atttaaattaagcacttatatcataagcgcttatcatataagtgcttatgtataagc 28842977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 39971210 - 39971297
Alignment:
Q  262 aacattttaattaagtgcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaag 349  Q
    |||| ||||||||||  ||||||  || ||| ||||||| |||||||||||||||||||  ||||| || || ||||||||||||||||    
T  39971210 aacaatttaattaagctcttataacatcaacacttatcatataagtgcttatgtataagttactta-tataacaaaagataaaataaag 39971297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 5816 - 5744
Alignment:
Q  278 gcttatagtataaacgcttatcagataagtgcttatgtataag-cacttactacaataaaagataaaataaag 349  Q
    ||||||||||||||| ||||||| |||||||||||| || |||  | || ||| ||| |||||||||||||||    
T  5816 gcttatagtataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 5744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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