View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_89 (Length: 366)
Name: NF1111_low_89
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 56 - 350
Target Start/End: Complemental strand, 21908215 - 21907921
Alignment:
| Q |
56 |
aagtctagttttagaataaacaagtttcaacgcttggtctttgggaacatcatataaaaccatgatgataattcaaagttaattccttcttttccctcct |
155 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21908215 |
aagtttagttttagaataaacaagtttcaacgcttggtctttgggaacatcatataaaaccatgatgataattcaaagtcaattccttcttttccctcct |
21908116 |
T |
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| Q |
156 |
tatataagaccatataccttcagtaaagggttagcatatcaaaatccaactttcttgggtcactttaaattttcatttcaaagccaatgaagtaaactca |
255 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21908115 |
tatataagaccatataccttaaataaagggttagcatatcaaaatccaactttcttgggtcaatttaaattttcatttcaaagccaatgaagtaaactca |
21908016 |
T |
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| Q |
256 |
gcaaatacatatccaaatgtccaaaagcaataataaaatgatacaaaactatataactagtcaaaagagtatacctgatgactattgagtctgtg |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21908015 |
gcaaatacatatccaaatgtccaaaagcaataataaaatgatacaaaacgatataactagtcaaaagagtatacctgatgactattgagtctgtg |
21907921 |
T |
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