View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_low_93 (Length: 359)
Name: NF1111_low_93
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 103 - 283
Target Start/End: Complemental strand, 54917314 - 54917134
Alignment:
| Q |
103 |
gaactcacatgattagcgcatatcatagataaatcatcccattgttactcttgcctagtattcaaaaaccgttttggatatattaacgagttaccaccga |
202 |
Q |
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| T |
54917314 |
gaactcacatgattagcgtatatcatagataaatcatcccattgttaatcttgcctagtattcaaaaaccgttttggatatattaacgagttaccaccga |
54917215 |
T |
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| Q |
203 |
ctttcctagtcaaagtttgtgtttgttcttttgtcaaagcaacacctgtgtactcgcatataaaaaacccacctagaataa |
283 |
Q |
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| T |
54917214 |
ctttcctagtcaaagtttgtgtttgttcttttgtcaaagcaacacctgtgtacttgcatataaaaaccccacctaaaataa |
54917134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 54911944 - 54911800
Alignment:
| Q |
108 |
cacatgattagcgcatatcatagataaatcatcccattgttactcttgcctagtattcaaaaaccgttttggatatattaacgagttaccaccgactttc |
207 |
Q |
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| T |
54911944 |
cacatgattagcgtgtatcataaacaaatcatcccattgttt-tcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattc |
54911846 |
T |
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| Q |
208 |
ctagtcaaagtttgtgtttgttcttttgtcaaagcaacacctgtgt |
253 |
Q |
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| T |
54911845 |
ctagtcaaagtttgtgcttgctccttagtcaaaacaacccctgtgt |
54911800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 54917986 - 54918059
Alignment:
| Q |
123 |
tatcatagataaatcatcccattgttactcttgcctagtattcaaaaaccgttttggatatattaacgagttac |
196 |
Q |
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| T |
54917986 |
tatcagagacaaatcaccccattgttcatcccacctagtattcaaaaatcgttatggatatatcaacgagttac |
54918059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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