View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_low_94 (Length: 358)
Name: NF1111_low_94
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_low_94 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 170; Significance: 4e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 100 - 277
Target Start/End: Complemental strand, 47299432 - 47299255
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299432 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaatacaattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagag |
47299333 |
T |
|
| Q |
200 |
cttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47299332 |
cttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcgcttcat |
47299255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 100 - 277
Target Start/End: Complemental strand, 47292825 - 47292648
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagag |
199 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
47292825 |
attacatgcaaccatcttgaatacaaacaaattttttcgccaaataccattaaggaagaagatactgcttctctagttcatcgatctttcttctttagag |
47292726 |
T |
|
| Q |
200 |
cttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
277 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
47292725 |
cttctgacatagctgcgcttcgtctcttggttccatttcaccttcgtcaatgcaccacatttgatcttatcgcttcat |
47292648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 100 - 277
Target Start/End: Original strand, 47267423 - 47267600
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctctagtccatcaatctttcttctttagag |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||||| || |||||| ||||||| | | ||||| |||||||||||||||||||| |
|
|
| T |
47267423 |
attacatgcaaccatcatgaatacgaacaaattttttcgtcaaatacaatcaaggaagaagataccacaaccctagttcatcaatctttcttctttagga |
47267522 |
T |
|
| Q |
200 |
cttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcacttcat |
277 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
47267523 |
cttcagacattgttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatcacttcat |
47267600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 47283385 - 47283560
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctc---tagtccatcaatctttcttcttta |
196 |
Q |
| |
|
||||| ||||||||| |||||| |||||||| ||| || |||||| || |||||| ||||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
47283385 |
attacttgcaaccatcgtgaatatgaacaaatacttacgtcaaatatcaacaaggaagaagatgctgctactaccatagtccatcaatctttcttcttta |
47283484 |
T |
|
| Q |
197 |
gagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcac |
272 |
Q |
| |
|
| |||| ||||||| || | |||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
47283485 |
cactttctcacatagctgcaatccgtcacttgattccatttcaccttcgtcaatgcagtacatttgatcttatcac |
47283560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 47242512 - 47242675
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttcttta |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| | |
|
|
| T |
47242512 |
attacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttcttca |
47242611 |
T |
|
| Q |
197 |
gagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacatt |
260 |
Q |
| |
|
| || || ||||||| ||||| |||||||||| ||||||||| ||| ||||| ||||| |
|
|
| T |
47242612 |
cacctgctcacatagctgtgattcgttgcttggttccaattcaccttcatcattgcactacatt |
47242675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 47256640 - 47256816
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttcttta |
196 |
Q |
| |
|
||||| ||||||||| |||||| |||||||| ||| |||||||||| ||| |||||| |||||||| || | |||||||||||||||||||||| | |
|
|
| T |
47256640 |
attacttgcaaccatcgtgaatatgaacaaatacttccgccaaatacgtacatcaaggaagaagatactactattgtagtccatcaatctttcttcttca |
47256739 |
T |
|
| Q |
197 |
gagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcact |
273 |
Q |
| |
|
| | || ||||||| | |||||| |||||||||| |||||||| || ||||| ||| ||||||||||||| |
|
|
| T |
47256740 |
catccgctcacatagctgcgattcgtcgcttggttccacttcacctttctcggtgcactgcatacgatcttatcact |
47256816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 47278793 - 47278967
Alignment:
| Q |
101 |
ttacatgcaaccattttgaatacgaacaaattctttcgccaaataccattaaggaaaaagatactgcttctc---tagtccatcaatctttcttctttag |
197 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||||| |||||| || |||||| ||||| |||| || |||||||||| ||||||||||||| |
|
|
| T |
47278793 |
ttacttgcaaccatcatgaatacgaacaaatactttcgtcaaatatcaacaaggaagaagatgttgctgctaccatagtccatcactctttcttctttac |
47278892 |
T |
|
| Q |
198 |
agctt-ctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcac |
272 |
Q |
| |
|
|||| || |||||| |||||| ||| |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
47278893 |
-gcttactcgcatagctgagattcgtcgtttgattccatttcaccttcgtcaatgcagtacatttgatcttatcac |
47278967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 271
Target Start/End: Original strand, 32731183 - 32731357
Alignment:
| Q |
100 |
attacatgcaaccattttgaatacgaacaaattctttcgccaaatac---cattaaggaaaaagatactgcttctctagtccatcaatctttcttcttta |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||| ||| || ||| |||||||| || |||||||||||||||||||||| | |
|
|
| T |
32731183 |
attacatgcaaccatcgtgaatacgaacaaatactttcgccaaatacctacatcaaagaagaagatactactatcgtagtccatcaatctttcttcttca |
32731282 |
T |
|
| Q |
197 |
gagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatca |
271 |
Q |
| |
|
| || || ||||||| | ||||| |||||||||| ||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
32731283 |
cacctgctcacatagctgcgattcgttgcttggttccaattcaccttcatcattgcactacatttgatcttatca |
32731357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University